ann: changes by commit
switch to grouped by file view, user index
branch to review (2010-03-02 to 2010-03-16) v227
- backing out Hiram's last change. Mary noticed that if this trackDb was pushed to the RR before the tetNig chain/net tables are released, then the tetNig1 chainNet track would go away.
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.101 - lines changed: 6, context: html, text, full: html, text
- reverting Hiram's change. It would have caused tetNig1 chains and nets on the RR to switch from 'Tetraodon' to 'tetNig1'.
- src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra 1.3 - lines changed: 1, context: html, text, full: html, text
- added BAM to the list of formats that need an embedded URL.
- src/hg/hgCustom/hgCustom.c 1.139 - lines changed: 1, context: html, text, full: html, text
- trying to clarify the release name of this batch
- src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html 1.16 - lines changed: 2, context: html, text, full: html, text
- added error message for non-chrom-based tables
- src/utils/qa/checkOffend.csh 1.12 - lines changed: 1, context: html, text, full: html, text
- added missing closing A tag
- src/hg/makeDb/trackDb/human/hg19/pgSnp.html 1.3 - lines changed: 1, context: html, text, full: html, text
- trying to clear this up
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html 1.22 - lines changed: 7, context: html, text, full: html, text
- moved sentence. added period.
- src/hg/makeDb/trackDb/tetraodon/tetNig2/gap.html 1.3 - lines changed: 5, context: html, text, full: html, text
- added disclaimer about findLevel output since all chainNets now use top-level
chainNet.html file
- src/utils/qa/chain.csh 1.28 - lines changed: 4, context: html, text, full: html, text
- src/utils/qa/net.csh 1.23 - lines changed: 4, context: html, text, full: html, text
- only for vertebrate assemblies.
- src/utils/qa/chain.csh 1.29 - lines changed: 1, context: html, text, full: html, text
- src/utils/qa/net.csh 1.24 - lines changed: 1, context: html, text, full: html, text
- turning on genbank updates for both aplCal1 and tetNig2
- src/hg/makeDb/genbank/etc/rr.dbs 1.87 - lines changed: 2, context: html, text, full: html, text
- swapping tetNig1 c/n for tetNig2 c/n.
- src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra 1.4 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.103 - lines changed: 6, context: html, text, full: html, text
- overriding old tetNig1 c/n
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.chainNet.ra 1.10 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra 1.12 - lines changed: 1, context: html, text, full: html, text
- this is the only way we could get oryLat1 and 2 to place nicely with the new
tetNig2 c/n shortLabels.
- src/hg/makeDb/trackDb/medaka/oryLat1/trackDb.chainNet.ra 1.2 - lines changed: 9, context: html, text, full: html, text
- src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra 1.11 - lines changed: 1, context: html, text, full: html, text
- Massive change of all instances of ($o_date/$o_db) to ($o_date). This is
because there was a recent change to hgcentral.dbDb adding much more detail to
the description field. That made ($o_date/$o_db) redundant. Found by Ann and sanctioned by
Angie.
- src/hg/makeDb/trackDb/ancestor/borEut13/trackDb.ra 1.10 - lines changed: 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/canHg10/trackDb.ra 1.11 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/canHg11/trackDb.ra 1.6 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/canHg12/trackDb.ra 1.8 - lines changed: 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/canHg4/trackDb.ra 1.13 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/canHg9/trackDb.ra 1.8 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/car46/trackDb.ra 1.10 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/catArr1/trackDb.ra 1.7 - lines changed: 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/euaGli13/trackDb.ra 1.6 - lines changed: 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/gliRes13/trackDb.ra 1.6 - lines changed: 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/homIni13/trackDb.ra 1.9 - lines changed: 12, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/homIni14/trackDb.ra 1.8 - lines changed: 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/homIni20/trackDb.ra 1.6 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/homPan20/trackDb.ra 1.6 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/priMat13/trackDb.ra 1.8 - lines changed: 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/rodEnt13/trackDb.ra 1.6 - lines changed: 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ancestor/trackDb.ra 1.12 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/anopheles/trackDb.ra 1.20 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/apis/apiMel2/trackDb.ra 1.28 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/apis/trackDb.ra 1.16 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/blatFr1.html 1.8 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cat/trackDb.ra 1.15 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/chainNet.html 1.2 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/chicken/galGal1/trackDb.ra 1.16 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra 1.79 - lines changed: 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra 1.41 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra 1.55 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra 1.41 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/dm1/trackDb.ra 1.63 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra 1.63 - lines changed: 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/dm3/trackDb.ra 1.16 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/dp1/trackDb.ra 1.17 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/dp2/trackDb.ra 1.13 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/dp3/trackDb.ra 1.17 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droAna1/trackDb.ra 1.16 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droEre1/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droGri1/trackDb.ra 1.9 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droMoj1/trackDb.ra 1.15 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droMoj2/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droSim1/trackDb.ra 1.20 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droVir1/trackDb.ra 1.15 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droVir2/trackDb.ra 1.7 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droYak1/trackDb.ra 1.18 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/droYak2/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/drosophila/trackDb.ra 1.88 - lines changed: 37, context: html, text, full: html, text
- src/hg/makeDb/trackDb/fugu/trackDb.ra 1.81 - lines changed: 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg10/trackDb.ra 1.7 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg12/trackDb.ra 1.18 - lines changed: 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg13/trackDb.ra 1.49 - lines changed: 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg15/trackDb.ra 1.87 - lines changed: 17, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg16/trackDb.ra 1.590 - lines changed: 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg17/trackDb.ra 1.457 - lines changed: 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.475 - lines changed: 15, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.104 - lines changed: 88, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/trackDb.ra 1.526 - lines changed: 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm2/trackDb.ra 1.21 - lines changed: 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm2X/trackDb.ra 1.3 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm3/trackDb.ra 1.43 - lines changed: 12, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm3X/trackDb.ra 1.3 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm4/trackDb.ra 1.29 - lines changed: 9, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm5/trackDb.ra 1.54 - lines changed: 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra 1.68 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra 1.69 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/trackDb.ra 1.210 - lines changed: 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/opossum/trackDb.ra 1.55 - lines changed: 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rat/rn2/trackDb.ra 1.9 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rat/rn3/trackDb.ra 1.68 - lines changed: 22, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rat/rn5/trackDb.ra 1.5 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rhesus/trackDb.ra 1.24 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/squirt/ci1/trackDb.ra 1.53 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/squirt/ci2/trackDb.ra 1.10 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/squirt/cioSav1/trackDb.ra 1.6 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/squirt/cioSav2/trackDb.ra 1.9 - lines changed: 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.61 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.86 - lines changed: 226, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra 1.623 - lines changed: 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/caeRem1/trackDb.ra 1.3 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/cb1/trackDb.ra 1.23 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/cb2/trackDb.ra 1.6 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/ce1/trackDb.ra 1.41 - lines changed: 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/ce2/trackDb.ra 1.38 - lines changed: 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/ce3/trackDb.ra 1.11 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/ce4/trackDb.ra 1.43 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/worm/trackDb.ra 1.44 - lines changed: 28, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/danRer1/trackDb.ra 1.39 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/danRer2/trackDb.ra 1.37 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra 1.62 - lines changed: 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.79 - lines changed: 6, context: html, text, full: html, text
- un-hard-coded hg18 from script
- src/utils/qa/qaEncodeTracks.csh 1.9 - lines changed: 2, context: html, text, full: html, text
switch to grouped by file view, user index