giardine: changes by file

branch to review (2010-03-02 to 2010-03-16) v227

• src/hg/hgTracks/simpleTracks.c
  • 1.127 lines changed: 3, context: html, text, full: html, text
    Handle empty strings in alleleFreq column of pgSnp tracks
• src/hg/hgc/hgc.c
  • 1.1601 lines changed: 37, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/hgc/hgcData/links.ra
  • 1.28 lines changed: 1, context: html, text, full: html, text
    Updated dbPEX links.
• src/hg/inc/pgPhenoAssoc.h
  • 1.1 lines changed: 65, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/inc/pgPolyphenPred.h
  • 1.1 lines changed: 73, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/inc/pgSiftPred.h
  • 1.1 lines changed: 75, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/inc/pgSnp.h
  • 1.4 lines changed: 4, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/makefile
  • 1.403 lines changed: 2, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgPhenoAssoc.as
  • 1.1 lines changed: 9, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgPhenoAssoc.c
  • 1.1 lines changed: 142, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgPhenoAssoc.sql
  • 1.1 lines changed: 15, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgPolyphenPred.as
  • 1.1 lines changed: 11, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgPolyphenPred.c
  • 1.1 lines changed: 220, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgPolyphenPred.sql
  • 1.1 lines changed: 17, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgSiftPred.as
  • 1.1 lines changed: 15, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgSiftPred.c
  • 1.1 lines changed: 259, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgSiftPred.sql
  • 1.1 lines changed: 21, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/lib/pgSnp.c
  • 1.8 lines changed: 34, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks
• src/hg/makeDb/doc/hg18.txt
  • 1.403 lines changed: 6, context: html, text, full: html, text
    Adding phenotype tables for pgSnp track hgc clicks, and new genomes
• src/hg/makeDb/trackDb/tagTypes.tab
  • 1.11 lines changed: 3, context: html, text, full: html, text
    Added tags for additions to genome variants track
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.524 lines changed: 134, context: html, text, full: html, text
    Adding new personal genomes to the pgSnp track (Hgwdev only for now)
• src/hg/makeDb/trackDb/human/hg18/pgSnpHgwdev.html
  • 1.2 lines changed: 236, context: html, text, full: html, text
    This includes all pgSnp tracks so it can be used when updating the pgSnp track to include these additions.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.472 lines changed: 27, context: html, text, full: html, text
    Add phenotype tables to hg18 pgSnp tracks where available