giardine: changes by commit

branch to review (2010-03-02 to 2010-03-16) v227

• Handle empty strings in alleleFreq column of pgSnp tracks
  • src/hg/hgTracks/simpleTracks.c 1.127 - lines changed: 3, context: html, text, full: html, text
• Updated dbPEX links.
  • src/hg/hgc/hgcData/links.ra 1.28 - lines changed: 1, context: html, text, full: html, text
• Adding phenotype tables for pgSnp track hgc clicks
  • src/hg/hgc/hgc.c 1.1601 - lines changed: 37, context: html, text, full: html, text
  • src/hg/inc/pgPhenoAssoc.h 1.1 - lines changed: 65, context: html, text, full: html, text
  • src/hg/inc/pgPolyphenPred.h 1.1 - lines changed: 73, context: html, text, full: html, text
  • src/hg/inc/pgSiftPred.h 1.1 - lines changed: 75, context: html, text, full: html, text
  • src/hg/inc/pgSnp.h 1.4 - lines changed: 4, context: html, text, full: html, text
  • src/hg/lib/makefile 1.403 - lines changed: 2, context: html, text, full: html, text
  • src/hg/lib/pgPhenoAssoc.as 1.1 - lines changed: 9, context: html, text, full: html, text
  • src/hg/lib/pgPhenoAssoc.c 1.1 - lines changed: 142, context: html, text, full: html, text
  • src/hg/lib/pgPhenoAssoc.sql 1.1 - lines changed: 15, context: html, text, full: html, text
  • src/hg/lib/pgPolyphenPred.as 1.1 - lines changed: 11, context: html, text, full: html, text
  • src/hg/lib/pgPolyphenPred.c 1.1 - lines changed: 220, context: html, text, full: html, text
  • src/hg/lib/pgPolyphenPred.sql 1.1 - lines changed: 17, context: html, text, full: html, text
  • src/hg/lib/pgSiftPred.as 1.1 - lines changed: 15, context: html, text, full: html, text
  • src/hg/lib/pgSiftPred.c 1.1 - lines changed: 259, context: html, text, full: html, text
  • src/hg/lib/pgSiftPred.sql 1.1 - lines changed: 21, context: html, text, full: html, text
  • src/hg/lib/pgSnp.c 1.8 - lines changed: 34, context: html, text, full: html, text
• This includes all pgSnp tracks so it can be used when updating the pgSnp track to include these additions.
  • src/hg/makeDb/trackDb/human/hg18/pgSnpHgwdev.html 1.2 - lines changed: 236, context: html, text, full: html, text
• Adding new personal genomes to the pgSnp track (Hgwdev only for now)
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.524 - lines changed: 134, context: html, text, full: html, text
• Add phenotype tables to hg18 pgSnp tracks where available
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.472 - lines changed: 27, context: html, text, full: html, text
• Adding phenotype tables for pgSnp track hgc clicks, and new genomes
  • src/hg/makeDb/doc/hg18.txt 1.403 - lines changed: 6, context: html, text, full: html, text
• Added tags for additions to genome variants track
  • src/hg/makeDb/trackDb/tagTypes.tab 1.11 - lines changed: 3, context: html, text, full: html, text