rhead: changes by file

branch to review (2010-03-02 to 2010-03-16) v227

• src/hg/makeDb/trackDb/README
  • 1.102 lines changed: 25, context: html, text, full: html, text
    Added notes about release public.
• src/hg/makeDb/trackDb/makefile
  • 1.286 lines changed: 5, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
  • 1.285 lines changed: 2, context: html, text, full: html, text
    Changed beta target to buildBeta in preparation for changing to alpha/beta/public trackDb makes. It does not seem to be used anywhere.
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.622 lines changed: 6, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/apis/apiMel2/trackDb.ra
  • 1.27 lines changed: 1, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/fugu/trackDb.ra
  • 1.80 lines changed: 1, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.525 lines changed: 1, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.456 lines changed: 2, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.922 lines changed: 495, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.beta.ra
  • 1.3 lines changed: 144, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.beta.ra
  • 1.2 lines changed: 61, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.87 lines changed: 4, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/worm/trackDb.ra
  • 1.43 lines changed: 6, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.78 lines changed: 4, context: html, text, full: html, text
    Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
• src/utils/qa/findLevel
  • 1.5 lines changed: 13, context: html, text, full: html, text
    Added changes to work with updated tdbQuery that recognizes multiple release tags (like beta,public).
  • 1.4 lines changed: 13, context: html, text, full: html, text
    Do db check with hgsql instead of tdbQuery, as unrelated errors there will mess with the db check. Also give an error if nothing tdbQuery only gives errors.
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Changed html file lookup so that it actually starts at the assembly level, like it says it does. Thanks, Ann.
  • 1.2 lines changed: 10, context: html, text, full: html, text
    Changed dependency on symlink in home directory to dependency on the kent source tree in home directory. Also moved this check closer to the top, as tdbQuery run by default also depends on the tree being in the home dir.