rhead: changes by commit

branch to review (2010-03-02 to 2010-03-16) v227

• Changed dependency on symlink in home directory to dependency on the kent source tree in home directory. Also moved this check closer to the top, as tdbQuery run by default also depends on the tree being in the home dir.
  • src/utils/qa/findLevel 1.2 - lines changed: 10, context: html, text, full: html, text
• Changed html file lookup so that it actually starts at the assembly level, like it says it does. Thanks, Ann.
  • src/utils/qa/findLevel 1.3 - lines changed: 1, context: html, text, full: html, text
• Changed beta target to buildBeta in preparation for changing to alpha/beta/public trackDb makes. It does not seem to be used anywhere.
  • src/hg/makeDb/trackDb/makefile 1.285 - lines changed: 2, context: html, text, full: html, text
• Do db check with hgsql instead of tdbQuery, as unrelated errors there will mess with the db check. Also give an error if nothing tdbQuery only gives errors.
  • src/utils/qa/findLevel 1.4 - lines changed: 13, context: html, text, full: html, text
• Added notes about release public.
  • src/hg/makeDb/trackDb/README 1.102 - lines changed: 25, context: html, text, full: html, text
• Added changes to work with updated tdbQuery that recognizes multiple release tags (like beta,public).
  • src/utils/qa/findLevel 1.5 - lines changed: 13, context: html, text, full: html, text
• Changing from a 2-state trackDb (alpha,beta), to a 3-state trackDb (alpha,beta,public).
  • src/hg/makeDb/trackDb/apis/apiMel2/trackDb.ra 1.27 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.chainNet.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.80 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.ra 1.456 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.922 - lines changed: 495, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.beta.ra 1.3 - lines changed: 144, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.beta.ra 1.2 - lines changed: 61, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.525 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile 1.286 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.87 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.622 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/trackDb.ra 1.43 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.78 - lines changed: 4, context: html, text, full: html, text