angie: changes by file

review to branch (2010-03-30 to 2010-04-06) v228

• src/hg/hgTrackUi/hgTrackUi.c
  • 1.518 lines changed: 1, context: html, text, full: html, text
    hgTrackUi.c
• src/hg/hgTracks/cds.h
  • 1.24 lines changed: 3, context: html, text, full: html, text
    Make the blue for query-insertion-at-end darker and bluer, so it is more easy to distinguish from the green for polyA.
• src/hg/lib/hui.c
  • 1.271 lines changed: 2, context: html, text, full: html, text
    Oops, forgot an #ifdef USE_BAM (thanks Galt).
• src/hg/makeDb/doc/hg16.txt
  • 1.12 lines changed: 14, context: html, text, full: html, text
    Regenerated kgTargetAli from knownGene table (instead of wrong build dir), but didn't reload -- Ann and I feel it's not worth the QA effort.
• src/hg/makeDb/doc/hg17.txt
  • 1.127 lines changed: 17, context: html, text, full: html, text
    DGV: data update (v9).
• src/hg/makeDb/doc/hg18.txt
  • 1.411 lines changed: 9, context: html, text, full: html, text
    Data update for gwasCatalog.
  • 1.409 lines changed: 16, context: html, text, full: html, text
    DGV: data update (v9).
• src/hg/makeDb/doc/hg19.txt
  • 1.95 lines changed: 6, context: html, text, full: html, text
    Data update for gwasCatalog.
  • 1.94 lines changed: 107, context: html, text, full: html, text
    DGV v9 (first time DGV is in hg19). Also a bit more info about how Belinda mapped over the personal genome variants track from hg18.
• src/inc/common.mk
  • 1.78 lines changed: 14, context: html, text, full: html, text
    Removed redundant 'ifeq(${VAR},) VAR=0' -- if that evals true then the subsequent 'ifeq(${VAR},1)' would fail anyway. Did a little indenting/nesting of related var checks.