angie: changes by commit

review to branch (2010-03-30 to 2010-04-06) v228

• Oops, forgot an #ifdef USE_BAM (thanks Galt).
  • src/hg/lib/hui.c 1.271 - lines changed: 2, context: html, text, full: html, text
• DGV: data update (v9).
  • src/hg/makeDb/doc/hg17.txt 1.127 - lines changed: 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg18.txt 1.409 - lines changed: 16, context: html, text, full: html, text
• DGV v9 (first time DGV is in hg19). Also a bit more info about how Belinda mapped over the personal genome variants track from hg18.
  • src/hg/makeDb/doc/hg19.txt 1.94 - lines changed: 107, context: html, text, full: html, text
• Removed redundant 'ifeq(${VAR},) VAR=0' -- if that evals true then the subsequent 'ifeq(${VAR},1)' would fail anyway. Did a little indenting/nesting of related var checks.
  • src/inc/common.mk 1.78 - lines changed: 14, context: html, text, full: html, text
• Regenerated kgTargetAli from knownGene table (instead of wrong build dir), but didn't reload -- Ann and I feel it's not worth the QA effort.
  • src/hg/makeDb/doc/hg16.txt 1.12 - lines changed: 14, context: html, text, full: html, text
• Data update for gwasCatalog.
  • src/hg/makeDb/doc/hg18.txt 1.411 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt 1.95 - lines changed: 6, context: html, text, full: html, text
• Make the blue for query-insertion-at-end darker and bluer, so it is more easy to distinguish from the green for polyA.
  • src/hg/hgTracks/cds.h 1.24 - lines changed: 3, context: html, text, full: html, text
• hgTrackUi.c
  • src/hg/hgTrackUi/hgTrackUi.c 1.518 - lines changed: 1, context: html, text, full: html, text