hiram: changes by file

branch to review (2010-03-23 to 2010-03-30) v228

• src/hg/makeDb/doc/hg19.txt
  • 1.92 lines changed: 48, context: html, text, full: html, text
    done with susScr2 lastz and swap
• src/hg/makeDb/doc/mm9.txt
  • 1.130 lines changed: 51, context: html, text, full: html, text
    done with susScr2 lastz and swap
• src/hg/makeDb/doc/monDom5.txt
  • 1.20 lines changed: 48, context: html, text, full: html, text
    done with susScr2 lastz and swap
• src/hg/makeDb/doc/susScr2.txt
  • 1.2 lines changed: 318, context: html, text, full: html, text
    running a bosTau4 lastz and done with swaps from hg19 mm9 and monDom5
  • 1.1 lines changed: 81, context: html, text, full: html, text
    initial browser up and running
• src/hg/makeDb/genbank/etc/genbank.conf
  • 1.366 lines changed: 14, context: html, text, full: html, text
    adding susScr2 - Pig
• src/hg/makeDb/trackDb/makefile
  • 1.287 lines changed: 2, context: html, text, full: html, text
    adding susScr2 to the build
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • 1.22 lines changed: 10, context: html, text, full: html, text
    proper priorities on chainNetPoodle and RheMac2 and DanRer5
• src/hg/makeDb/trackDb/pig/trackDb.ra
  • 1.2 lines changed: 7, context: html, text, full: html, text
    adding ctgPos2 track
• src/hg/makeDb/trackDb/pig/susScr2/ctgPos2.html
  • 1.1 lines changed: 18, context: html, text, full: html, text
    adding ctgPos2 track
• src/hg/makeDb/trackDb/pig/susScr2/description.html
  • 1.2 lines changed: 36, context: html, text, full: html, text
    finishing off these description pages
  • 1.1 lines changed: 129, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pig/susScr2/gap.html
  • 1.2 lines changed: 49, context: html, text, full: html, text
    finishing off these description pages
  • 1.1 lines changed: 64, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pig/susScr2/gold.html
  • 1.3 lines changed: 3, context: html, text, full: html, text
    adding ctgPos2 track
  • 1.2 lines changed: 27, context: html, text, full: html, text
    finishing off these description pages
  • 1.1 lines changed: 23, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pig/susScr2/trackDb.ra
  • 1.1 lines changed: 8, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/utils/automation/EnsGeneAutomate.pm
  • 1.21 lines changed: 172, context: html, text, full: html, text
    adding version 57 definitions
• src/hg/utils/gapToLift/gapToLift.c
  • 1.9 lines changed: 16, context: html, text, full: html, text
    add minGap argument
• src/utils/newProg/newProg.c
  • 1.30 lines changed: 1, context: html, text, full: html, text
    it is EXE not EXT