hiram: changes by commit

branch to review (2010-03-23 to 2010-03-30) v228

• proper priorities on chainNetPoodle and RheMac2 and DanRer5
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra 1.22 - lines changed: 10, context: html, text, full: html, text
• it is EXE not EXT
  • src/utils/newProg/newProg.c 1.30 - lines changed: 1, context: html, text, full: html, text
• initial files from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/pig/susScr2/description.html 1.1 - lines changed: 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr2/gap.html 1.1 - lines changed: 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr2/gold.html 1.1 - lines changed: 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr2/trackDb.ra 1.1 - lines changed: 8, context: html, text, full: html, text
• adding susScr2 to the build
  • src/hg/makeDb/trackDb/makefile 1.287 - lines changed: 2, context: html, text, full: html, text
• initial browser up and running
  • src/hg/makeDb/doc/susScr2.txt 1.1 - lines changed: 81, context: html, text, full: html, text
• adding version 57 definitions
  • src/hg/utils/automation/EnsGeneAutomate.pm 1.21 - lines changed: 172, context: html, text, full: html, text
• add minGap argument
  • src/hg/utils/gapToLift/gapToLift.c 1.9 - lines changed: 16, context: html, text, full: html, text
• adding susScr2 - Pig
  • src/hg/makeDb/genbank/etc/genbank.conf 1.366 - lines changed: 14, context: html, text, full: html, text
• finishing off these description pages
  • src/hg/makeDb/trackDb/pig/susScr2/description.html 1.2 - lines changed: 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr2/gap.html 1.2 - lines changed: 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr2/gold.html 1.2 - lines changed: 27, context: html, text, full: html, text
• adding ctgPos2 track
  • src/hg/makeDb/trackDb/pig/susScr2/ctgPos2.html 1.1 - lines changed: 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/susScr2/gold.html 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pig/trackDb.ra 1.2 - lines changed: 7, context: html, text, full: html, text
• done with susScr2 lastz and swap
  • src/hg/makeDb/doc/hg19.txt 1.92 - lines changed: 48, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm9.txt 1.130 - lines changed: 51, context: html, text, full: html, text
  • src/hg/makeDb/doc/monDom5.txt 1.20 - lines changed: 48, context: html, text, full: html, text
• running a bosTau4 lastz and done with swaps from hg19 mm9 and monDom5
  • src/hg/makeDb/doc/susScr2.txt 1.2 - lines changed: 318, context: html, text, full: html, text