kate: changes by file

branch to review (2010-03-23 to 2010-03-30) v228

• src/hg/encode/DAFs/2.0/affyRnaChip.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/broadChipSeq.daf
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/broadMapability.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/buOrchid.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/caltechRnaSeq.daf
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/cshlRnaSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/dukeDnaseSeq.daf
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/dukeExonArray.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/gisDnaPet.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/gisRnaPet.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/gisRnaSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/haibChipSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/haibMethylRrbs.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/haibMethylSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/haibRnaSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/helicosRnaSeq.daf
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/nhgriElnitskiBiPro.daf
  • 1.3 lines changed: 20, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/nhgriElnitskiNegReg.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/rikenCageSolexa.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/stanfordChipSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/stanfordRnaSeq.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/sunyRipChip.daf
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/uMassWengTfbsValid.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/uncFaireSeq.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Add data agreement suffix
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/utAustinChipSeq.daf
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/uwChipSeq.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/uwDnaseDgf.daf
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/uwDnaseValid.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/DAFs/2.0/uwExonArray.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add track group
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.218 lines changed: 21, context: html, text, full: html, text
    1. Allow control terms to be used with any variable 2. Add co-PI to lab metadata
  • 1.217 lines changed: 14, context: html, text, full: html, text
    1. Special handling of 'None' 2. Table/filename gen uses view and replicate last
  • 1.216 lines changed: 3, context: html, text, full: html, text
    Proper error if CV term is not registered
• src/hg/encode/encodeValidate/config/pi.ra
  • 1.15 lines changed: 11, context: html, text, full: html, text
    Minor changes
• src/hg/encode/encodeValidate/test/expected/chipseq/load.ra
  • 1.9 lines changed: 4, context: html, text, full: html, text
    Change to file/tablenaming conventions
• src/hg/encode/encodeValidate/test/expected/chipseq/trackDb.ra
  • 1.12 lines changed: 3, context: html, text, full: html, text
    Change to file/tablenaming conventions