kate: changes by commit

branch to review (2010-03-23 to 2010-03-30) v228

• Add track group
  • src/hg/encode/DAFs/2.0/affyRnaChip.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/broadChipSeq.daf 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/broadMapability.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/buOrchid.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/caltechRnaSeq.daf 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/cshlRnaSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/dukeDnaseSeq.daf 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/dukeExonArray.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/gisDnaPet.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/gisRnaPet.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/gisRnaSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibChipSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibMethylRrbs.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibMethylSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibRnaSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/helicosRnaSeq.daf 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/nhgriElnitskiBiPro.daf 1.3 - lines changed: 20, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/nhgriElnitskiNegReg.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/rikenCageSolexa.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/stanfordChipSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/stanfordRnaSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/sunyRipChip.daf 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/uMassWengTfbsValid.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/uncFaireSeq.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/utAustinChipSeq.daf 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/uwChipSeq.daf 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/uwDnaseDgf.daf 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/uwDnaseValid.daf 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/uwExonArray.daf 1.2 - lines changed: 1, context: html, text, full: html, text
• Proper error if CV term is not registered
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.216 - lines changed: 3, context: html, text, full: html, text
• 1. Special handling of 'None' 2. Table/filename gen uses view and replicate last
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.217 - lines changed: 14, context: html, text, full: html, text
• Change to file/tablenaming conventions
  • src/hg/encode/encodeValidate/test/expected/chipseq/load.ra 1.9 - lines changed: 4, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/test/expected/chipseq/trackDb.ra 1.12 - lines changed: 3, context: html, text, full: html, text
• Add data agreement suffix
  • src/hg/encode/DAFs/2.0/uncFaireSeq.daf 1.3 - lines changed: 1, context: html, text, full: html, text
• 1. Allow control terms to be used with any variable 2. Add co-PI to lab metadata
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.218 - lines changed: 21, context: html, text, full: html, text
• Minor changes
  • src/hg/encode/encodeValidate/config/pi.ra 1.15 - lines changed: 11, context: html, text, full: html, text