braney: changes by file

review to branch (2010-04-13 to 2010-04-19) v229

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.229 lines changed: 1, context: html, text, full: html, text
    make H1-hESC into male. Poof!
• src/hg/makeDb/doc/ailMel1.txt
  • 1.13 lines changed: 26, context: html, text, full: html, text
    added Human Proteins
  • 1.12 lines changed: 26, context: html, text, full: html, text
    oops added tscan by mistake
  • 1.11 lines changed: 189, context: html, text, full: html, text
    starting Human Proteins
• src/hg/makeDb/doc/susScr2.txt
  • 1.7 lines changed: 27, context: html, text, full: html, text
    finished Human Proteins
  • 1.6 lines changed: 165, context: html, text, full: html, text
    starting human proteins
• src/hg/makeDb/doc/encodeDccHg18/wgEncodeDukeAffyExonArray.release1.notes.txt
  • 1.1 lines changed: 160, context: html, text, full: html, text
    release1 notes
• src/hg/makeDb/doc/encodeDccHg18/wgEncodeGisDnaPet.release1.notes.txt
  • 1.3 lines changed: 22, context: html, text, full: html, text
    get the number of tables correct
• src/hg/makeDb/schema/all.joiner
  • 1.789 lines changed: 2, context: html, text, full: html, text
    add Human Proteins to ailMel1
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.954 lines changed: 1, context: html, text, full: html, text
    fix parentage of subTrack in GIS DNA
  • 1.953 lines changed: 1, context: html, text, full: html, text
    add replicate to sortOrder for GIS RnaSeq
  • 1.952 lines changed: 4, context: html, text, full: html, text
    just have a couple of the GIS DNA tracks on by default
  • 1.950 lines changed: 2, context: html, text, full: html, text
    changed long and short labels for GIS DNA PET
  • 1.949 lines changed: 41, context: html, text, full: html, text
    fix GisDnaPet to have the fragment sizes in numerical rather than alphabetical order
  • 1.947 lines changed: 6, context: html, text, full: html, text
    add colors to cell types for GisDna
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    fix a long label
  • 1.6 lines changed: 1, context: html, text, full: html, text
    fix a long label
  • 1.5 lines changed: 57, context: html, text, full: html, text
    make short labels unique
  • 1.4 lines changed: 138, context: html, text, full: html, text
    make long labels unique and less than 80 chars
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra
  • 1.12 lines changed: 43, context: html, text, full: html, text
    set new default visibilities
  • 1.11 lines changed: 0, context: html, text, full: html, text
    change tabs to 8 spaces
  • 1.10 lines changed: 6, context: html, text, full: html, text
    more metadata and short label fixups. Will I ever be through?
  • 1.9 lines changed: 6, context: html, text, full: html, text
    change type=wig to type=bedGraph
  • 1.8 lines changed: 4, context: html, text, full: html, text
    more labels
  • 1.7 lines changed: 1, context: html, text, full: html, text
    more labels
  • 1.6 lines changed: 67, context: html, text, full: html, text
    some long labels
  • 1.5 lines changed: 31, context: html, text, full: html, text
    fix up short labels
  • 1.4 lines changed: 11, context: html, text, full: html, text
    remove table that doesn't exist
  • 1.3 lines changed: 17, context: html, text, full: html, text
    change some metadata from longPolyA+ to total
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html
  • 1.10 lines changed: 6, context: html, text, full: html, text
    add a little description for the various views
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html
  • 1.6 lines changed: 15, context: html, text, full: html, text
    Add a description for some missing views, and little more text
• src/hg/makeDb/trackDb/human/hg19/trackDb.enc.ra
  • 1.8 lines changed: 16, context: html, text, full: html, text
    change labels in response to Flo
  • 1.7 lines changed: 126, context: html, text, full: html, text
    add 14 Rrbs tracks