braney: changes by commit

review to branch (2010-04-13 to 2010-04-19) v229

• get the number of tables correct
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeGisDnaPet.release1.notes.txt 1.3 - lines changed: 22, context: html, text, full: html, text
• starting human proteins
  • src/hg/makeDb/doc/susScr2.txt 1.6 - lines changed: 165, context: html, text, full: html, text
• finished Human Proteins
  • src/hg/makeDb/doc/susScr2.txt 1.7 - lines changed: 27, context: html, text, full: html, text
• make long labels unique and less than 80 chars
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra 1.4 - lines changed: 138, context: html, text, full: html, text
• make short labels unique
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra 1.5 - lines changed: 57, context: html, text, full: html, text
• add colors to cell types for GisDna
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.947 - lines changed: 6, context: html, text, full: html, text
• make H1-hESC into male. Poof!
  • src/hg/encode/encodeValidate/config/cv.ra 1.229 - lines changed: 1, context: html, text, full: html, text
• fix GisDnaPet to have the fragment sizes in numerical rather than alphabetical order
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.949 - lines changed: 41, context: html, text, full: html, text
• changed long and short labels for GIS DNA PET
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.950 - lines changed: 2, context: html, text, full: html, text
• just have a couple of the GIS DNA tracks on by default
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.952 - lines changed: 4, context: html, text, full: html, text
• add replicate to sortOrder for GIS RnaSeq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.953 - lines changed: 1, context: html, text, full: html, text
• Add a description for some missing views, and little more text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html 1.6 - lines changed: 15, context: html, text, full: html, text
• fix parentage of subTrack in GIS DNA
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.954 - lines changed: 1, context: html, text, full: html, text
• release1 notes
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeDukeAffyExonArray.release1.notes.txt 1.1 - lines changed: 160, context: html, text, full: html, text
• fix a long label
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.alpha.ra 1.6 - lines changed: 1, context: html, text, full: html, text
• change some metadata from longPolyA+ to total
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.3 - lines changed: 17, context: html, text, full: html, text
• remove table that doesn't exist
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.4 - lines changed: 11, context: html, text, full: html, text
• fix up short labels
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.5 - lines changed: 31, context: html, text, full: html, text
• some long labels
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.6 - lines changed: 67, context: html, text, full: html, text
• more labels
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.8 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.7 - lines changed: 1, context: html, text, full: html, text
• add a little description for the various views
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html 1.10 - lines changed: 6, context: html, text, full: html, text
• change type=wig to type=bedGraph
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.9 - lines changed: 6, context: html, text, full: html, text
• starting Human Proteins
  • src/hg/makeDb/doc/ailMel1.txt 1.11 - lines changed: 189, context: html, text, full: html, text
• oops added tscan by mistake
  • src/hg/makeDb/doc/ailMel1.txt 1.12 - lines changed: 26, context: html, text, full: html, text
• more metadata and short label fixups. Will I ever be through?
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.10 - lines changed: 6, context: html, text, full: html, text
• change tabs to 8 spaces
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.11 - lines changed: 0, context: html, text, full: html, text
• set new default visibilities
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.alpha.ra 1.12 - lines changed: 43, context: html, text, full: html, text
• add 14 Rrbs tracks
  • src/hg/makeDb/trackDb/human/hg19/trackDb.enc.ra 1.7 - lines changed: 126, context: html, text, full: html, text
• change labels in response to Flo
  • src/hg/makeDb/trackDb/human/hg19/trackDb.enc.ra 1.8 - lines changed: 16, context: html, text, full: html, text
• added Human Proteins
  • src/hg/makeDb/doc/ailMel1.txt 1.13 - lines changed: 26, context: html, text, full: html, text
• add Human Proteins to ailMel1
  • src/hg/makeDb/schema/all.joiner 1.789 - lines changed: 2, context: html, text, full: html, text