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review to branch (2010-04-13 to 2010-04-19) v229
- forgot to use parameter that was added to get either GTF or GTF (per Hiram)
- src/hg/hgTables/gffOut.c 1.22 - lines changed: 2, context: html, text, full: html, text
- reenabled chimp alignments
- src/hg/makeDb/genbank/etc/align.dbs 1.118 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs 1.122 - lines changed: 2, context: html, text, full: html, text
- have pslCheck catch overall ranges that don't match block ranges
- add options to convert TBLASTN to codon nucleotide/nucleotide coordinates, fixed bug with tStart/tEnd extending beyond actual range
- src/hg/blastToPsl/blastXmlToPsl.c 1.2 - lines changed: 9, context: html, text, full: html, text
- src/hg/blastToPsl/pslBuild.c 1.2 - lines changed: 43, context: html, text, full: html, text
- src/hg/blastToPsl/pslBuild.h 1.2 - lines changed: 8, context: html, text, full: html, text
- src/hg/blastToPsl/scoreSort.c 1.7 - lines changed: 132, context: html, text, full: html, text
- src/hg/blastToPsl/tests/expected/prot1NucCoordTest.psl 1.1 - lines changed: 72, context: html, text, full: html, text
- src/hg/blastToPsl/tests/makefile 1.25 - lines changed: 52, context: html, text, full: html, text
- add N-SCAN to susScr2
- src/hg/makeDb/doc/susScr2.txt 1.8 - lines changed: 26, context: html, text, full: html, text
- src/hg/makeDb/trackDb/nscanGene.html 1.5 - lines changed: 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pig/susScr2/trackDb.ra 1.6 - lines changed: 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra 1.625 - lines changed: 1, context: html, text, full: html, text
- fixed bug were target name index was not created if bin was not created
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