braney: changes by commit

review to branch (2010-04-27 to 2010-05-04) v230

• starting human proteins
  • src/hg/makeDb/doc/oryCun2.txt 1.9 - lines changed: 161, context: html, text, full: html, text
• add brTestPlus for test of multiWig
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.478 - lines changed: 10, context: html, text, full: html, text
• add extTable
  • src/hg/makeDb/trackDb/tagTypes.tab 1.13 - lines changed: 1, context: html, text, full: html, text
• first pass at multiWiggle. This shouldn't change existing behavior. Add extTable to your bigWig trackDb to get two tables into one bigWig wiggle track.
  • src/hg/hgTracks/bedGraph.c 1.22 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTracks/bigWigTrack.c 1.10 - lines changed: 47, context: html, text, full: html, text
  • src/hg/hgTracks/wigCommon.h 1.10 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c 1.106 - lines changed: 62, context: html, text, full: html, text
• Human Proteins
  • src/hg/makeDb/doc/oryCun2.txt 1.10 - lines changed: 27, context: html, text, full: html, text
• add oryCun2 to Human Protein tracks
  • src/hg/makeDb/schema/all.joiner 1.790 - lines changed: 2, context: html, text, full: html, text
• add Tullius
  • src/hg/encode/encodeValidate/config/labs.ra 1.13 - lines changed: 3, context: html, text, full: html, text
• add minMax option for the ENCODE validator to use
  • src/utils/bigWigInfo/bigWigInfo.c 1.8 - lines changed: 10, context: html, text, full: html, text
• add support for bigWig's to put min and max in trackDb file
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.223 - lines changed: 14, context: html, text, full: html, text
• first pass at BAM sequence validation. Only supports alignments with no indels or trimming.
  • src/hg/encode/validateFiles/validateFiles.c 1.40 - lines changed: 57, context: html, text, full: html, text
• some label changes for RRBS. Some data for link out for Yale pseudo in gencode
  • src/hg/makeDb/trackDb/human/hg19/trackDb.enc.ra 1.11 - lines changed: 5, context: html, text, full: html, text
• yale pseudogene association with gencode ids
  • src/hg/inc/yaleGencodeAssoc.h 1.1 - lines changed: 63, context: html, text, full: html, text
• files to describe and load table that maps gencode id's to yale pseudogene id's
  • src/hg/lib/yaleGencodeAssoc.as 1.1 - lines changed: 8, context: html, text, full: html, text
  • src/hg/lib/yaleGencodeAssoc.c 1.1 - lines changed: 132, context: html, text, full: html, text
  • src/hg/lib/yaleGencodeAssoc.sql 1.1 - lines changed: 13, context: html, text, full: html, text
• add yaleGencodeAssoc
  • src/hg/lib/makefile 1.408 - lines changed: 2, context: html, text, full: html, text
• add links out of gencode track to yale pseudogenes
  • src/hg/hgc/hgc.c 1.1617 - lines changed: 27, context: html, text, full: html, text
• a little test program to test gif and png timing
  • src/hg/oneShot/timeGifPng/makefile 1.1 - lines changed: 18, context: html, text, full: html, text
  • src/hg/oneShot/timeGifPng/timeGifPng.c 1.1 - lines changed: 203, context: html, text, full: html, text