markd: changes by file

review to branch (2010-04-27 to 2010-05-04) v230

• src/hg/genePredToFakePsl/genePredToFakePsl.c
  • 1.4 lines changed: 79, context: html, text, full: html, text
    Fixed incorrect calculation of CDS refactor
• src/hg/hgTracks/simpleTracks.c
  • 1.137 lines changed: 1, context: html, text, full: html, text
    fixed breakage noticed by JK during code review
• src/hg/hgc/hgc.c
  • 1.1618 lines changed: 26, context: html, text, full: html, text
    include link back to browser in tables of PSL. also fix corner case on PAR were link to wrong chrom
• src/hg/lib/extFile.as
  • 1.2 lines changed: 1, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/gbCdnaInfo.as
  • 1.4 lines changed: 2, context: html, text, full: html, text
    update schema doc
• src/hg/lib/gbSeq.as
  • 1.3 lines changed: 25, context: html, text, full: html, text
    fixed manic editing overwrite of file
  • 1.2 lines changed: 25, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/gbStatus.as
  • 1.1 lines changed: 19, context: html, text, full: html, text
    added gbStatus schema doc
• src/hg/lib/genbankTables.as
  • 1.7 lines changed: 4, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/history.as
  • 1.2 lines changed: 1, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/hui.c
  • 1.281 lines changed: 1, context: html, text, full: html, text
    enabled indel display controls for BAM tracks
• src/hg/lib/metaInfo.as
  • 1.2 lines changed: 1, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/namedSessionDb.as
  • 1.3 lines changed: 2, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/seq.as
  • 1.3 lines changed: 2, context: html, text, full: html, text
    use bigint for file offsets
  • 1.2 lines changed: 2, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/swInterPro.as
  • 1.4 lines changed: 1, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/targetDb.as
  • 1.3 lines changed: 1, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/trackVersion.as
  • 1.2 lines changed: 1, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/lib/transRegCodeMotif.as
  • 1.2 lines changed: 1, context: html, text, full: html, text
    fixed invalid autoSql that prevented descriptions from being displayed
• src/hg/makeDb/genbank/doc/to-do.txt
  • 1.122 lines changed: 2, context: html, text, full: html, text
    bad tandem dup example
• src/hg/makeDb/trackDb/chimp/panTro1/xenoRefGene.html
  • 1.6 lines changed: 55, context: html, text, full: html, text
    removed human-as-chimp xeno refgene hack
• src/hg/makeDb/trackDb/chimp/panTro2/est.html
  • 1.4 lines changed: 108, context: html, text, full: html, text
    removed html related to chimp/human hack
• src/hg/makeDb/trackDb/chimp/panTro2/intronEst.html
  • 1.6 lines changed: 117, context: html, text, full: html, text
    removed html related to chimp/human hack
• src/hg/makeDb/trackDb/chimp/panTro2/mrna.html
  • 1.4 lines changed: 73, context: html, text, full: html, text
    removed html related to chimp/human hack
• src/hg/makeDb/trackDb/chimp/panTro2/refGene.html
  • 1.5 lines changed: 64, context: html, text, full: html, text
    removed html related to chimp/human hack
• src/hg/makeDb/trackDb/chimp/panTro2/xenoMrna.html
  • 1.5 lines changed: 80, context: html, text, full: html, text
    removed html related to chimp/human hack
• src/hg/makeDb/trackDb/chimp/panTro2/xenoRefGene.html
  • 1.7 lines changed: 55, context: html, text, full: html, text
    removed human-as-chimp xeno refgene hack
• src/inc/errCatch.h
  • 1.3 lines changed: 1, context: html, text, full: html, text
    fixed incorrect documentation