hartera: changes by file

review to branch (2010-05-11 to 2010-05-18) v231

• src/hg/makeDb/doc/hg18.txt
  • 1.420 lines changed: 17, context: html, text, full: html, text
    Recreated Signal subtracks for Burge RNA-seq data. Used -bed12 option for bedItemOverlapCount to take the blocks into account.
  • 1.418 lines changed: 12, context: html, text, full: html, text
    Updated downloads for new CRG mapability data.
• src/hg/makeDb/doc/hg19.txt
  • 1.112 lines changed: 13, context: html, text, full: html, text
    Recreated Signal subtracks for Burge RNA-seq data. Used -bed12 option for bedItemOverlapCount to take the blocks into account.
  • 1.111 lines changed: 1, context: html, text, full: html, text
    Minor edit.
  • 1.109 lines changed: 17, context: html, text, full: html, text
    Documented adding Mapability 24mer subtrack (CRG) to trackDb entry. Updated downloads for CRG Mapability subtracks.
  • 1.105 lines changed: 25, context: html, text, full: html, text
    Updated names of files and tables as all ENCODE tracks are to have wgEncode prefix.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.974 lines changed: 5, context: html, text, full: html, text
    Changed file names in beta release metadata for CRG Mapability subtracks.
  • 1.973 lines changed: 5, context: html, text, full: html, text
    Changed file names in alpha release metadata for CRG Mapability subtracks.
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.118 lines changed: 1, context: html, text, full: html, text
    Changed include to new ENCODE trackDb filename.
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Corrected filename.
  • 1.6 lines changed: 1, context: html, text, full: html, text
    Changed data version for CRG Mapability 36mer track as it was produced in January.
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Changed file names back to gzipped version as these refer to downloads.
  • 1.4 lines changed: 18, context: html, text, full: html, text
    Added subtrack entry for CRG 24mers in Mapability track. Updated file names in metadata.
  • 1.2 lines changed: 16, context: html, text, full: html, text
    Updated Mapability track and subtrack names to have the wgEncode prefix instead of enc.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html
  • 1.1 lines changed: 49, context: html, text, full: html, text
    Changed name of the Mapability track, used to be encMapability.