hartera: changes by commit

review to branch (2010-05-11 to 2010-05-18) v231

• Updated Mapability track and subtrack names to have the wgEncode prefix instead of enc.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra 1.2 - lines changed: 16, context: html, text, full: html, text
• Changed include to new ENCODE trackDb filename.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.118 - lines changed: 1, context: html, text, full: html, text
• Updated names of files and tables as all ENCODE tracks are to have wgEncode prefix.
  • src/hg/makeDb/doc/hg19.txt 1.105 - lines changed: 25, context: html, text, full: html, text
• Added subtrack entry for CRG 24mers in Mapability track. Updated file names in metadata.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra 1.4 - lines changed: 18, context: html, text, full: html, text
• Changed file names back to gzipped version as these refer to downloads.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra 1.5 - lines changed: 6, context: html, text, full: html, text
• Updated downloads for new CRG mapability data.
  • src/hg/makeDb/doc/hg18.txt 1.418 - lines changed: 12, context: html, text, full: html, text
• Documented adding Mapability 24mer subtrack (CRG) to trackDb entry. Updated downloads for CRG Mapability subtracks.
  • src/hg/makeDb/doc/hg19.txt 1.109 - lines changed: 17, context: html, text, full: html, text
• Changed data version for CRG Mapability 36mer track as it was produced in January.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra 1.6 - lines changed: 1, context: html, text, full: html, text
• Changed name of the Mapability track, used to be encMapability.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html 1.1 - lines changed: 49, context: html, text, full: html, text
• Corrected filename.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra 1.7 - lines changed: 1, context: html, text, full: html, text
• Minor edit.
  • src/hg/makeDb/doc/hg19.txt 1.111 - lines changed: 1, context: html, text, full: html, text
• Recreated Signal subtracks for Burge RNA-seq data. Used -bed12 option for bedItemOverlapCount to take the blocks into account.
  • src/hg/makeDb/doc/hg18.txt 1.420 - lines changed: 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt 1.112 - lines changed: 13, context: html, text, full: html, text
• Changed file names in alpha release metadata for CRG Mapability subtracks.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.973 - lines changed: 5, context: html, text, full: html, text
• Changed file names in beta release metadata for CRG Mapability subtracks.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.974 - lines changed: 5, context: html, text, full: html, text