kent: changes by file

branch to review (2010-05-04 to 2010-05-11) v231

• src/README
  • 1.23 lines changed: 2, context: html, text, full: html, text
    Getting explicit about not abbreviating 5 letter words.
• src/hg/archaeStuff/tooltip/tooltip.c
  • 1.8 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/encode/DAFs/2.0/gisChiaPet.daf
  • 1.1 lines changed: 43, context: html, text, full: html, text
    Adding 2.0 versions of gisChaiPet data agreement.
• src/hg/encode/DAFs/2.0/gisChiaPetExample.ddf
  • 1.1 lines changed: 17, context: html, text, full: html, text
    Adding 2.0 versions of gisChaiPet data agreement.
• src/hg/hgCustom/hgCustom.c
  • 1.141 lines changed: 9, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgGenome/bedList.c
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgGenome/custom.c
  • 1.5 lines changed: 4, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgGenome/hgGenome.c
  • 1.67 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgGenome/import.c
  • 1.19 lines changed: 13, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgGenome/maf.c
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/bedList.c
  • 1.74 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/compositeTrack.c
  • 1.19 lines changed: 4, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/correlate.c
  • 1.79 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/custom.c
  • 1.47 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/hgTables.c
  • 1.194 lines changed: 24, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/identifiers.c
  • 1.30 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/intersect.c
  • 1.53 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/maf.c
  • 1.20 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/mainPage.c
  • 1.150 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/pal.c
  • 1.17 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/schema.c
  • 1.64 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/seqOut.c
  • 1.24 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/wiggle.c
  • 1.78 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTables/wikiTrack.c
  • 1.3 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgText/hgText.c
  • 1.172 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTrackUi/encodePeakUi.c
  • 1.3 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTrackUi/hgTrackUi.c
  • 1.524 lines changed: 98, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.523 lines changed: 2, context: html, text, full: html, text
    Making container code use composite UI code for the moment.
  • 1.522 lines changed: 8, context: html, text, full: html, text
    Removing what looks to be an ancient Andy code-in-progress comment and a stray function prototype that went with it.
  • 1.521 lines changed: 11, context: html, text, full: html, text
    Simplifying/generalizing code that prints link to parent track's UI page.
  • 1.520 lines changed: 3, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/hgTracks/altGraphXTrack.c
  • 1.17 lines changed: 4, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/bamTrack.c
  • 1.31 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/bedGraph.c
  • 1.23 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/bedTrack.c
  • 1.25 lines changed: 14, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/bigBedTrack.c
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/bigWigTrack.c
  • 1.11 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/cds.c
  • 1.106 lines changed: 6, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/cgapSageTrack.c
  • 1.15 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/chainTrack.c
  • 1.39 lines changed: 6, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/chromGraphTrack.c
  • 1.21 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/config.c
  • 1.92 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/container.c
  • 1.3 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.2 lines changed: 44, context: html, text, full: html, text
    Separating out multiWigs into a separate module from container.
  • 1.1 lines changed: 97, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/hgTracks/container.h
  • 1.1 lines changed: 13, context: html, text, full: html, text
    Separating out multiWigs into a separate module from container.
• src/hg/hgTracks/contigTrack.c
  • 1.7 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/cutterTrack.c
  • 1.15 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/cytoBandTrack.c
  • 1.14 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/encode.c
  • 1.24 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/expRatioTracks.c
  • 1.49 lines changed: 21, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/factorSource.c
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.6 lines changed: 14, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/hgTracks/goldTrack.c
  • 1.5 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/hapmapTrack.c
  • 1.48 lines changed: 16, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/hgTracks.c
  • 1.1647 lines changed: 86, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.1646 lines changed: 3, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/hgTracks/hgTracks.h
  • 1.210 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.209 lines changed: 3, context: html, text, full: html, text
    Improving some comments
  • 1.208 lines changed: 7, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/hgTracks/imageV2.c
  • 1.27 lines changed: 8, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/loweLabTracks.c
  • 1.32 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/mafTrack.c
  • 1.65 lines changed: 6, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/makeItemsTrack.c
  • 1.11 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/makefile
  • 1.93 lines changed: 1, context: html, text, full: html, text
    Separating out multiWigs into a separate module from container.
  • 1.92 lines changed: 1, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/hgTracks/multiWig.c
  • 1.2 lines changed: 14, context: html, text, full: html, text
    Making calculations that all wigs below share same limits work better.
  • 1.1 lines changed: 67, context: html, text, full: html, text
    Separating out multiWigs into a separate module from container.
• src/hg/hgTracks/netTrack.c
  • 1.27 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/pslTrack.c
  • 1.34 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/retroGene.c
  • 1.19 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/rmskTrack.c
  • 1.14 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/rnaFoldTrack.c
  • 1.9 lines changed: 4, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/rnaPLFoldTrack.c
  • 1.9 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/sampleTracks.c
  • 1.10 lines changed: 26, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/searchTracks.c
  • 1.2 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/simpleTracks.c
  • 1.139 lines changed: 104, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.138 lines changed: 27, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/hgTracks/switchGear.c
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/transMapTracks.c
  • 1.9 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/transcriptome.c
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/variation.c
  • 1.147 lines changed: 27, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/wigCommon.h
  • 1.11 lines changed: 7, context: html, text, full: html, text
    Separating out multiWigs into a separate module from container.
• src/hg/hgTracks/wigMafTrack.c
  • 1.146 lines changed: 20, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.145 lines changed: 22, context: html, text, full: html, text
    Fixing wigMaf tracks by being a little more careful about how the wiggle subtracks are manufactured.
• src/hg/hgTracks/wigTrack.c
  • 1.108 lines changed: 20, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.107 lines changed: 22, context: html, text, full: html, text
    Separating out multiWigs into a separate module from container.
• src/hg/hgTracks/wiki.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgTracks/wikiTrack.c
  • 1.21 lines changed: 9, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/bamClick.c
  • 1.21 lines changed: 4, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/bigBedClick.c
  • 1.11 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/cgapSageClick.c
  • 1.11 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/dbRIP.c
  • 1.9 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/encodeClick.c
  • 1.15 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/expClick.c
  • 1.25 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/hgc.c
  • 1.1620 lines changed: 348, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/hgdpClick.c
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/lowelab.c
  • 1.50 lines changed: 70, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/mafClick.c
  • 1.61 lines changed: 15, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/makeItemsClick.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/mgcClick.c
  • 1.33 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/parClick.c
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/regMotif.c
  • 1.22 lines changed: 6, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/retroClick.c
  • 1.15 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/rnaFoldClick.c
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/transMapClick.c
  • 1.13 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/hgc/wiggleClick.c
  • 1.34 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/inc/trackDb.h
  • 1.59 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.58 lines changed: 5, context: html, text, full: html, text
    Adding trackDbFieldsFromSettings
• src/hg/inc/wiggle.h
  • 1.90 lines changed: 12, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/cart.c
  • 1.119 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/chromGraphFactory.c
  • 1.18 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/customFactory.c
  • 1.124 lines changed: 20, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/customTrack.c
  • 1.181 lines changed: 13, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/genePred.c
  • 1.103 lines changed: 2, context: html, text, full: html, text
    Fixing indentation.
• src/hg/lib/hVarSubst.c
  • 1.8 lines changed: 5, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/hdb.c
  • 1.426 lines changed: 8, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.425 lines changed: 3, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/lib/hgMaf.c
  • 1.15 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/hui.c
  • 1.284 lines changed: 81, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.283 lines changed: 2, context: html, text, full: html, text
    removing commented out testing code.
• src/hg/lib/mdb.c
  • 1.6 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/metaTbl.c
  • 1.13 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/netCart.c
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/pcrResult.c
  • 1.12 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/trackDb.as
  • 1.6 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/trackDb.c
  • 1.11 lines changed: 4, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/trackDbCustom.c
  • 1.87 lines changed: 102, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.86 lines changed: 96, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/lib/web.c
  • 1.172 lines changed: 2, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/wiggleCart.c
  • 1.39 lines changed: 3, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/wiggleUtils.c
  • 1.56 lines changed: 1, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/lib/tests/customTrackTester.c
  • 1.5 lines changed: 7, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/makeDb/doc/hg18.txt
  • 1.415 lines changed: 4, context: html, text, full: html, text
    Adding a few more steps to regulation track.
  • 1.414 lines changed: 30, context: html, text, full: html, text
    Starting to put in instructions for the encode regulatory track. Will need polishing, but at least this will help me remember what I did.....
• src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c
  • 1.6 lines changed: 8, context: html, text, full: html, text
    Making it so scores go from 0-1000
  • 1.5 lines changed: 1, context: html, text, full: html, text
    Making it so that output scores are integer rather than floating point since they are in 0-1000 range.
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Removing unused variable.
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • 1.67 lines changed: 37, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • 1.66 lines changed: 4, context: html, text, full: html, text
    Removed some debugging statements.
  • 1.65 lines changed: 47, context: html, text, full: html, text
    Code to get container multiWig to go.
• src/hg/makeDb/trackDb/loadTracks
  • 1.21 lines changed: 1, context: html, text, full: html, text
    Uncommenting tdbQuery -check execution
• src/hg/makeDb/trackDb/tagTypes.tab
  • 1.19 lines changed: 1, context: html, text, full: html, text
    Making any type take maxItems.
  • 1.17 lines changed: 1, context: html, text, full: html, text
    Adding table tag
  • 1.16 lines changed: 2, context: html, text, full: html, text
    Adding a few new tags.
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • 1.93 lines changed: 312, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.630 lines changed: 2, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
  • 1.629 lines changed: 0, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/alpaca/vicPac1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/ancestor/trackDb.ra
  • 1.13 lines changed: 4, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/borEut13/trackDb.ra
  • 1.11 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/canHg10/trackDb.ra
  • 1.12 lines changed: 1, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/canHg11/trackDb.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/canHg12/trackDb.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/canHg4/trackDb.ra
  • 1.14 lines changed: 1, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/canHg9/trackDb.ra
  • 1.9 lines changed: 1, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/car46/trackDb.ra
  • 1.11 lines changed: 1, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/catArr1/trackDb.ra
  • 1.8 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/euaGli13/trackDb.ra
  • 1.7 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/gliRes13/trackDb.ra
  • 1.7 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/homIni13/trackDb.ra
  • 1.10 lines changed: 3, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/homIni14/trackDb.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/homIni20/trackDb.ra
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/homPan20/trackDb.ra
  • 1.7 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/priMat13/trackDb.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/ancestor/rodEnt13/trackDb.ra
  • 1.7 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/apis/trackDb.ra
  • 1.17 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/armadillo/dasNov1/trackDb.ra
  • 1.5 lines changed: 11, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/armadillo/dasNov2/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/baboon/papHam1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/cat/trackDb.ra
  • 1.16 lines changed: 3, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/cat/felCat3/trackDb.ra
  • 1.28 lines changed: 30, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/cat/felCatV17e/trackDb.ra
  • 1.4 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/cow/bosTau1/trackDb.ra
  • 1.21 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/cow/bosTau2/trackDb.ra
  • 1.12 lines changed: 30, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/cow/bosTau3/trackDb.ra
  • 1.10 lines changed: 30, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra
  • 1.23 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/dog/canFamPoodle1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/dolphin/turTru1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/trackDb.ra
  • 1.89 lines changed: 76, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/drosophila/dm1/trackDb.ra
  • 1.65 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
  • 1.64 lines changed: 3, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra
  • 1.65 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
  • 1.64 lines changed: 29, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/drosophila/dp2/trackDb.ra
  • 1.14 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/dp3/trackDb.ra
  • 1.18 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droAna1/trackDb.ra
  • 1.17 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droAna2/trackDb.ra
  • 1.13 lines changed: 16, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droEre1/trackDb.ra
  • 1.15 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droGri1/trackDb.ra
  • 1.10 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droMoj1/trackDb.ra
  • 1.16 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droMoj2/trackDb.ra
  • 1.8 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droSim1/trackDb.ra
  • 1.21 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droVir1/trackDb.ra
  • 1.16 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droVir2/trackDb.ra
  • 1.8 lines changed: 28, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/drosophila/droYak1/trackDb.ra
  • 1.19 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/elephant/loxAfr1/trackDb.ra
  • 1.5 lines changed: 15, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/elephant/loxAfr2/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/elephant/loxAfr3/trackDb.ra
  • 1.5 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/fugu/trackDb.ra
  • 1.82 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/gorilla/gorGor1/trackDb.ra
  • 1.4 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/gorilla/gorGor2/trackDb.ra
  • 1.2 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra
  • 1.12 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/hedgehog/eriEur1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/hiv/trackDb.ra
  • 1.8 lines changed: 28, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/trackDb.encode.ra
  • 1.104 lines changed: 475, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.531 lines changed: 207, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg16/trackDb.encode.ra
  • 1.16 lines changed: 120, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg16/trackDb.ra
  • 1.591 lines changed: 11, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg17/trackDb.encode.ra
  • 1.182 lines changed: 360, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.458 lines changed: 71, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChip.ra
  • 1.30 lines changed: 182, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChrom.ra
  • 1.11 lines changed: 34, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/trackDb.encodeCompAndVar.ra
  • 1.24 lines changed: 5, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/trackDb.encodeTxLevels.ra
  • 1.17 lines changed: 32, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.484 lines changed: 25, context: html, text, full: html, text
    More work on encode regulatory track.
  • 1.483 lines changed: 1, context: html, text, full: html, text
    Making subtracks of the regulatory wiggle configurable.
  • 1.482 lines changed: 340, context: html, text, full: html, text
    Adding regulatory track components. Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncodeRikenRawSignal.ra
  • 1.2 lines changed: 22, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.beta.ra
  • 1.4 lines changed: 143, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.alpha.ra
  • 1.7 lines changed: 60, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.beta.ra
  • 1.3 lines changed: 60, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.117 lines changed: 31, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/kangarooRat/dipOrd1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/lamprey/trackDb.ra
  • 1.9 lines changed: 16, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/lancelet/trackDb.ra
  • 1.3 lines changed: 16, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/lizard/anoCar1/trackDb.ra
  • 1.4 lines changed: 17, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/marmoset/calJac1/trackDb.ra
  • 1.15 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra
  • 1.7 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/medaka/oryLat2/trackDb.ra
  • 1.9 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/megabat/pteVam1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/microbat/myoLuc1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.214 lines changed: 5, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra
  • 1.69 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.broadStem.ra
  • 1.15 lines changed: 28, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra
  • 1.70 lines changed: 49, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.91 lines changed: 24, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/mouseLemur/micMur1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/opossum/trackDb.ra
  • 1.56 lines changed: 6, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra
  • 1.35 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/orangutan/ponAbe1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/other/nemVec1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/panda/ailMel1/trackDb.ra
  • 1.2 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/pika/ochPri2/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/platypus/ornAna1/trackDb.ra
  • 1.21 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/rabbit/oryCun1/trackDb.ra
  • 1.7 lines changed: 16, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/rabbit/oryCun2/trackDb.ra
  • 1.4 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/rat/trackDb.ra
  • 1.82 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/rhesus/trackDb.ra
  • 1.25 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/rockHyrax/proCap1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/rockHyrax/proCav1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/sacCer/trackDb.ra
  • 1.49 lines changed: 6, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/sars/sc1/trackDb.ra
  • 1.17 lines changed: 16, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/seaHare/aplCal1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/sheep/oviAri1/trackDb.ra
  • 1.2 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/shrew/sorAra1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/sloth/choHof1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/squirrel/speTri1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/squirt/trackDb.ra
  • 1.15 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/squirt/ci1/trackDb.ra
  • 1.54 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/squirt/ci2/trackDb.ra
  • 1.11 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/squirt/cioSav1/trackDb.ra
  • 1.7 lines changed: 26, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/squirt/cioSav2/trackDb.ra
  • 1.10 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/tarsier/tarSyr1/trackDb.ra
  • 1.3 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/tenrec/echTel1/trackDb.ra
  • 1.7 lines changed: 16, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/tetraodon/trackDb.ra
  • 1.62 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/urchin/strPur1/trackDb.ra
  • 1.11 lines changed: 16, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/urchin/strPur2/trackDb.ra
  • 1.3 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/wallaby/macEug1/trackDb.ra
  • 1.2 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/worm/trackDb.ra
  • 1.46 lines changed: 14, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
  • 1.45 lines changed: 20, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/worm/caePb1/trackDb.ra
  • 1.8 lines changed: 30, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/worm/caePb2/trackDb.ra
  • 1.7 lines changed: 30, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/worm/caeRem2/trackDb.ra
  • 1.10 lines changed: 40, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/worm/caeRem3/trackDb.ra
  • 1.6 lines changed: 27, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/worm/cb1/trackDb.ra
  • 1.24 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/worm/ce4/trackDb.ra
  • 1.45 lines changed: 11, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/worm/ce6/trackDb.ra
  • 1.23 lines changed: 28, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/worm/priPac1/trackDb.ra
  • 1.10 lines changed: 37, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra
  • 1.46 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra
  • 1.28 lines changed: 29, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.81 lines changed: 2, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra
  • 1.37 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
  • 1.36 lines changed: 6, context: html, text, full: html, text
    Changing subTrack to parent.
• src/hg/makeDb/trackDb/zebrafish/danRer6/trackDb.ra
  • 1.11 lines changed: 32, context: html, text, full: html, text
    Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
• src/hg/makeDb/trackDbPatch/trackDbPatch.c
  • 1.5 lines changed: 21, context: html, text, full: html, text
    Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
• src/hg/oneShot/tdbRewriteViewsToSubtracks1/tdbRewriteViewsToSubtracks1.c
  • 1.2 lines changed: 4, context: html, text, full: html, text
    Making usage statement reflect program name.
• src/hg/regulate/regCluster/regCluster.c
  • 1.3 lines changed: 13, context: html, text, full: html, text
    Doing another pass at the regulatory clustering - this time whole genome rather than just chromosome 22.
• src/hg/regulate/regClusterBedExpCfg/regClusterBedExpCfg.c
  • 1.2 lines changed: 91, context: html, text, full: html, text
    Doing another pass at the regulatory clustering - this time whole genome rather than just chromosome 22.
• src/hg/regulate/regClusterMakeTableOfTables/regClusterMakeTableOfTables.c
  • 1.3 lines changed: 13, context: html, text, full: html, text
    Doing another pass at the regulatory clustering - this time whole genome rather than just chromosome 22.
• src/inc/common.mk
  • 1.79 lines changed: 1, context: html, text, full: html, text
    Put in commented out line that does not have force-warnings-to-errors compiler flag.
• src/oneShot/rgbaGfxTest/rgbaGfxTest.c
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Fiddling with spacing.