kent: changes by commit

branch to review (2010-05-04 to 2010-05-11) v231

• Removing unused variable.
  • src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c 1.4 - lines changed: 1, context: html, text, full: html, text
• Starting to put in instructions for the encode regulatory track. Will need polishing, but at least this will help me remember what I did.....
  • src/hg/makeDb/doc/hg18.txt 1.414 - lines changed: 30, context: html, text, full: html, text
• Doing another pass at the regulatory clustering - this time whole genome rather than just chromosome 22.
  • src/hg/regulate/regCluster/regCluster.c 1.3 - lines changed: 13, context: html, text, full: html, text
  • src/hg/regulate/regClusterBedExpCfg/regClusterBedExpCfg.c 1.2 - lines changed: 91, context: html, text, full: html, text
  • src/hg/regulate/regClusterMakeTableOfTables/regClusterMakeTableOfTables.c 1.3 - lines changed: 13, context: html, text, full: html, text
• Uncommenting tdbQuery -check execution
  • src/hg/makeDb/trackDb/loadTracks 1.21 - lines changed: 1, context: html, text, full: html, text
• Getting explicit about not abbreviating 5 letter words.
  • src/README 1.23 - lines changed: 2, context: html, text, full: html, text
• Making it so that output scores are integer rather than floating point since they are in 0-1000 range.
  • src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c 1.5 - lines changed: 1, context: html, text, full: html, text
• Making it so scores go from 0-1000
  • src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c 1.6 - lines changed: 8, context: html, text, full: html, text
• Removed some debugging statements.
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.66 - lines changed: 4, context: html, text, full: html, text
• Code to get container multiWig to go.
  • src/hg/hgTrackUi/hgTrackUi.c 1.520 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/container.c 1.1 - lines changed: 97, context: html, text, full: html, text
  • src/hg/hgTracks/factorSource.c 1.6 - lines changed: 14, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1646 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h 1.208 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTracks/makefile 1.92 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c 1.138 - lines changed: 27, context: html, text, full: html, text
  • src/hg/lib/hdb.c 1.425 - lines changed: 3, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c 1.86 - lines changed: 96, context: html, text, full: html, text
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.65 - lines changed: 47, context: html, text, full: html, text
• Adding 2.0 versions of gisChaiPet data agreement.
  • src/hg/encode/DAFs/2.0/gisChiaPet.daf 1.1 - lines changed: 43, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/gisChiaPetExample.ddf 1.1 - lines changed: 17, context: html, text, full: html, text
• Adding trackDbFieldsFromSettings
  • src/hg/inc/trackDb.h 1.58 - lines changed: 5, context: html, text, full: html, text
• Adding a few more steps to regulation track.
  • src/hg/makeDb/doc/hg18.txt 1.415 - lines changed: 4, context: html, text, full: html, text
• Adding a few new tags.
  • src/hg/makeDb/trackDb/tagTypes.tab 1.16 - lines changed: 2, context: html, text, full: html, text
• Adding regulatory track components. Changing subTrack to parent.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.482 - lines changed: 340, context: html, text, full: html, text
• Changing subTrack to parent.
  • src/hg/makeDb/trackDb/ancestor/borEut13/trackDb.ra 1.11 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg10/trackDb.ra 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg11/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg12/trackDb.ra 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg4/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg9/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/car46/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/catArr1/trackDb.ra 1.8 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/euaGli13/trackDb.ra 1.7 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/gliRes13/trackDb.ra 1.7 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/homIni13/trackDb.ra 1.10 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/homIni14/trackDb.ra 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/homIni20/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/homPan20/trackDb.ra 1.7 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/priMat13/trackDb.ra 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/rodEnt13/trackDb.ra 1.7 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/trackDb.ra 1.13 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/trackDb.ra 1.16 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm1/trackDb.ra 1.64 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra 1.64 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/trackDb.ra 1.89 - lines changed: 76, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/trackDb.ra 1.8 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.encode.ra 1.16 - lines changed: 120, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.ra 1.591 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.encode.ra 1.182 - lines changed: 360, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.ra 1.458 - lines changed: 71, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChip.ra 1.30 - lines changed: 182, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChrom.ra 1.11 - lines changed: 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeCompAndVar.ra 1.24 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeTxLevels.ra 1.17 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncodeRikenRawSignal.ra 1.2 - lines changed: 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.beta.ra 1.4 - lines changed: 143, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.alpha.ra 1.7 - lines changed: 60, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.beta.ra 1.3 - lines changed: 60, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.encode.ra 1.104 - lines changed: 475, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.531 - lines changed: 207, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra 1.69 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.broadStem.ra 1.15 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra 1.70 - lines changed: 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.91 - lines changed: 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra 1.214 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.ra 1.56 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.ra 1.82 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/trackDb.ra 1.49 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.93 - lines changed: 312, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.629 - lines changed: 0, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce4/trackDb.ra 1.45 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce6/trackDb.ra 1.23 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/trackDb.ra 1.45 - lines changed: 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra 1.36 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.81 - lines changed: 2, context: html, text, full: html, text
• Fiddling with spacing.
  • src/oneShot/rgbaGfxTest/rgbaGfxTest.c 1.3 - lines changed: 4, context: html, text, full: html, text
• Fixing wigMaf tracks by being a little more careful about how the wiggle subtracks are manufactured.
  • src/hg/hgTracks/wigMafTrack.c 1.145 - lines changed: 22, context: html, text, full: html, text
• Improving some comments
  • src/hg/hgTracks/hgTracks.h 1.209 - lines changed: 3, context: html, text, full: html, text
• Separating out multiWigs into a separate module from container.
  • src/hg/hgTracks/container.c 1.2 - lines changed: 44, context: html, text, full: html, text
  • src/hg/hgTracks/container.h 1.1 - lines changed: 13, context: html, text, full: html, text
  • src/hg/hgTracks/makefile 1.93 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/multiWig.c 1.1 - lines changed: 67, context: html, text, full: html, text
  • src/hg/hgTracks/wigCommon.h 1.11 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c 1.107 - lines changed: 22, context: html, text, full: html, text
• Simplifying/generalizing code that prints link to parent track's UI page.
  • src/hg/hgTrackUi/hgTrackUi.c 1.521 - lines changed: 11, context: html, text, full: html, text
• Removing what looks to be an ancient Andy code-in-progress comment and a stray function prototype that went with it.
  • src/hg/hgTrackUi/hgTrackUi.c 1.522 - lines changed: 8, context: html, text, full: html, text
• removing commented out testing code.
  • src/hg/lib/hui.c 1.283 - lines changed: 2, context: html, text, full: html, text
• Making subtracks of the regulatory wiggle configurable.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.483 - lines changed: 1, context: html, text, full: html, text
• Making usage statement reflect program name.
  • src/hg/oneShot/tdbRewriteViewsToSubtracks1/tdbRewriteViewsToSubtracks1.c 1.2 - lines changed: 4, context: html, text, full: html, text
• Put in commented out line that does not have force-warnings-to-errors compiler flag.
  • src/inc/common.mk 1.79 - lines changed: 1, context: html, text, full: html, text
• Making container code use composite UI code for the moment.
  • src/hg/hgTrackUi/hgTrackUi.c 1.523 - lines changed: 2, context: html, text, full: html, text
• Making calculations that all wigs below share same limits work better.
  • src/hg/hgTracks/multiWig.c 1.2 - lines changed: 14, context: html, text, full: html, text
• Fixing indentation.
  • src/hg/lib/genePred.c 1.103 - lines changed: 2, context: html, text, full: html, text
• Adding table tag
  • src/hg/makeDb/trackDb/tagTypes.tab 1.17 - lines changed: 1, context: html, text, full: html, text
• More work on encode regulatory track.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.484 - lines changed: 25, context: html, text, full: html, text
• Removing all_mrna and all_est tracks from scaffold databases, since no longer needed, will use mrna and est tracks.
  • src/hg/makeDb/trackDb/alpaca/vicPac1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/apis/trackDb.ra 1.17 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/armadillo/dasNov1/trackDb.ra 1.5 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/armadillo/dasNov2/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/baboon/papHam1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat3/trackDb.ra 1.28 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCatV17e/trackDb.ra 1.4 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau1/trackDb.ra 1.21 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau2/trackDb.ra 1.12 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau3/trackDb.ra 1.10 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra 1.23 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFamPoodle1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dolphin/turTru1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm1/trackDb.ra 1.65 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra 1.65 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dp2/trackDb.ra 1.14 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dp3/trackDb.ra 1.18 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droAna1/trackDb.ra 1.17 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droAna2/trackDb.ra 1.13 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droEre1/trackDb.ra 1.15 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droGri1/trackDb.ra 1.10 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj1/trackDb.ra 1.16 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj2/trackDb.ra 1.8 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droSim1/trackDb.ra 1.21 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droVir1/trackDb.ra 1.16 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droVir2/trackDb.ra 1.8 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droYak1/trackDb.ra 1.19 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/loxAfr1/trackDb.ra 1.5 - lines changed: 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/loxAfr2/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/loxAfr3/trackDb.ra 1.5 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.82 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor1/trackDb.ra 1.4 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor2/trackDb.ra 1.2 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra 1.12 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hedgehog/eriEur1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.117 - lines changed: 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/kangarooRat/dipOrd1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/trackDb.ra 1.9 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lancelet/trackDb.ra 1.3 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/anoCar1/trackDb.ra 1.4 - lines changed: 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac1/trackDb.ra 1.15 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra 1.7 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/oryLat2/trackDb.ra 1.9 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/megabat/pteVam1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/microbat/myoLuc1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra 1.35 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/nemVec1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/panda/ailMel1/trackDb.ra 1.2 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/pika/ochPri2/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/ornAna1/trackDb.ra 1.21 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rabbit/oryCun1/trackDb.ra 1.7 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rabbit/oryCun2/trackDb.ra 1.4 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.ra 1.25 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rockHyrax/proCap1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rockHyrax/proCav1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sars/sc1/trackDb.ra 1.17 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/seaHare/aplCal1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sheep/oviAri1/trackDb.ra 1.2 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/shrew/sorAra1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sloth/choHof1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirrel/speTri1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/ci1/trackDb.ra 1.54 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/ci2/trackDb.ra 1.11 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/cioSav1/trackDb.ra 1.7 - lines changed: 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/cioSav2/trackDb.ra 1.10 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/squirt/trackDb.ra 1.15 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr1/trackDb.ra 1.3 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tenrec/echTel1/trackDb.ra 1.7 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.62 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra 1.630 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/urchin/strPur1/trackDb.ra 1.11 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/urchin/strPur2/trackDb.ra 1.3 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wallaby/macEug1/trackDb.ra 1.2 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caePb1/trackDb.ra 1.8 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caePb2/trackDb.ra 1.7 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeRem2/trackDb.ra 1.10 - lines changed: 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/caeRem3/trackDb.ra 1.6 - lines changed: 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/cb1/trackDb.ra 1.24 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/priPac1/trackDb.ra 1.10 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/trackDb.ra 1.46 - lines changed: 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro1/trackDb.ra 1.46 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.ra 1.28 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra 1.37 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer6/trackDb.ra 1.11 - lines changed: 32, context: html, text, full: html, text
• Refactoring to split the trackDb.tableName field into separate track and table fields. Similarly track.mapName field goes to the same track and table fields.
  • src/hg/archaeStuff/tooltip/tooltip.c 1.8 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgCustom/hgCustom.c 1.141 - lines changed: 9, context: html, text, full: html, text
  • src/hg/hgGenome/bedList.c 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgGenome/custom.c 1.5 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgGenome/hgGenome.c 1.67 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgGenome/import.c 1.19 - lines changed: 13, context: html, text, full: html, text
  • src/hg/hgGenome/maf.c 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTables/bedList.c 1.74 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTables/compositeTrack.c 1.19 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgTables/correlate.c 1.79 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTables/custom.c 1.47 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.c 1.194 - lines changed: 24, context: html, text, full: html, text
  • src/hg/hgTables/identifiers.c 1.30 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTables/intersect.c 1.53 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTables/maf.c 1.20 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTables/mainPage.c 1.150 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTables/pal.c 1.17 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTables/schema.c 1.64 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTables/seqOut.c 1.24 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTables/wiggle.c 1.78 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTables/wikiTrack.c 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgText/hgText.c 1.172 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTrackUi/encodePeakUi.c 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTrackUi/hgTrackUi.c 1.524 - lines changed: 98, context: html, text, full: html, text
  • src/hg/hgTracks/altGraphXTrack.c 1.17 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgTracks/bamTrack.c 1.31 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/bedGraph.c 1.23 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/bedTrack.c 1.25 - lines changed: 14, context: html, text, full: html, text
  • src/hg/hgTracks/bigBedTrack.c 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/bigWigTrack.c 1.11 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/cds.c 1.106 - lines changed: 6, context: html, text, full: html, text
  • src/hg/hgTracks/cgapSageTrack.c 1.15 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/chainTrack.c 1.39 - lines changed: 6, context: html, text, full: html, text
  • src/hg/hgTracks/chromGraphTrack.c 1.21 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTracks/config.c 1.92 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTracks/container.c 1.3 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/contigTrack.c 1.7 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/cutterTrack.c 1.15 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTracks/cytoBandTrack.c 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/encode.c 1.24 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/expRatioTracks.c 1.49 - lines changed: 21, context: html, text, full: html, text
  • src/hg/hgTracks/factorSource.c 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/goldTrack.c 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/hapmapTrack.c 1.48 - lines changed: 16, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1647 - lines changed: 86, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h 1.210 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c 1.27 - lines changed: 8, context: html, text, full: html, text
  • src/hg/hgTracks/loweLabTracks.c 1.32 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTracks/mafTrack.c 1.65 - lines changed: 6, context: html, text, full: html, text
  • src/hg/hgTracks/makeItemsTrack.c 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/netTrack.c 1.27 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/pslTrack.c 1.34 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTracks/retroGene.c 1.19 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTracks/rmskTrack.c 1.14 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/rnaFoldTrack.c 1.9 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgTracks/rnaPLFoldTrack.c 1.9 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTracks/sampleTracks.c 1.10 - lines changed: 26, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c 1.139 - lines changed: 104, context: html, text, full: html, text
  • src/hg/hgTracks/switchGear.c 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/transMapTracks.c 1.9 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/transcriptome.c 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/variation.c 1.147 - lines changed: 27, context: html, text, full: html, text
  • src/hg/hgTracks/wigMafTrack.c 1.146 - lines changed: 20, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c 1.108 - lines changed: 20, context: html, text, full: html, text
  • src/hg/hgTracks/wiki.c 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTracks/wikiTrack.c 1.21 - lines changed: 9, context: html, text, full: html, text
  • src/hg/hgc/bamClick.c 1.21 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgc/bigBedClick.c 1.11 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/cgapSageClick.c 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgc/dbRIP.c 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgc/encodeClick.c 1.15 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/expClick.c 1.25 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgc/hgc.c 1.1620 - lines changed: 348, context: html, text, full: html, text
  • src/hg/hgc/hgdpClick.c 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/lowelab.c 1.50 - lines changed: 70, context: html, text, full: html, text
  • src/hg/hgc/mafClick.c 1.61 - lines changed: 15, context: html, text, full: html, text
  • src/hg/hgc/makeItemsClick.c 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgc/mgcClick.c 1.33 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/parClick.c 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/regMotif.c 1.22 - lines changed: 6, context: html, text, full: html, text
  • src/hg/hgc/retroClick.c 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgc/rnaFoldClick.c 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/transMapClick.c 1.13 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/wiggleClick.c 1.34 - lines changed: 7, context: html, text, full: html, text
  • src/hg/inc/trackDb.h 1.59 - lines changed: 5, context: html, text, full: html, text
  • src/hg/inc/wiggle.h 1.90 - lines changed: 12, context: html, text, full: html, text
  • src/hg/lib/cart.c 1.119 - lines changed: 7, context: html, text, full: html, text
  • src/hg/lib/chromGraphFactory.c 1.18 - lines changed: 2, context: html, text, full: html, text
  • src/hg/lib/customFactory.c 1.124 - lines changed: 20, context: html, text, full: html, text
  • src/hg/lib/customTrack.c 1.181 - lines changed: 13, context: html, text, full: html, text
  • src/hg/lib/hVarSubst.c 1.8 - lines changed: 5, context: html, text, full: html, text
  • src/hg/lib/hdb.c 1.426 - lines changed: 8, context: html, text, full: html, text
  • src/hg/lib/hgMaf.c 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/lib/hui.c 1.284 - lines changed: 81, context: html, text, full: html, text
  • src/hg/lib/mdb.c 1.6 - lines changed: 3, context: html, text, full: html, text
  • src/hg/lib/metaTbl.c 1.13 - lines changed: 3, context: html, text, full: html, text
  • src/hg/lib/netCart.c 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/lib/pcrResult.c 1.12 - lines changed: 2, context: html, text, full: html, text
  • src/hg/lib/tests/customTrackTester.c 1.5 - lines changed: 7, context: html, text, full: html, text
  • src/hg/lib/trackDb.as 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/lib/trackDb.c 1.11 - lines changed: 4, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c 1.87 - lines changed: 102, context: html, text, full: html, text
  • src/hg/lib/web.c 1.172 - lines changed: 2, context: html, text, full: html, text
  • src/hg/lib/wiggleCart.c 1.39 - lines changed: 3, context: html, text, full: html, text
  • src/hg/lib/wiggleUtils.c 1.56 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.67 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDbPatch/trackDbPatch.c 1.5 - lines changed: 21, context: html, text, full: html, text
• Making any type take maxItems.
  • src/hg/makeDb/trackDb/tagTypes.tab 1.19 - lines changed: 1, context: html, text, full: html, text