markd: changes by commit

branch to review (2010-05-18 to 2010-05-25) v232

• allow specifying directories
  • src/utils/cvsTools/cvsFiles 1.5 - lines changed: 6, context: html, text, full: html, text
• Made C attribute related names more consistent with GFF3 specification. Fixed bug were bogus quotes were not detected. Fixed bug with empty attribute values.
  • src/hg/utils/gff3ToGenePred/tests/expected/bogusQuotesTest.out 1.1 - lines changed: 2, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/input/bogusQuotes.gff3 1.1 - lines changed: 2, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/makefile 1.5 - lines changed: 6, context: html, text, full: html, text
  • src/inc/gff3.h 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/lib/gff3.c 1.5 - lines changed: 109, context: html, text, full: html, text
  • src/lib/tests/input/specialCasesTest.gff3 1.2 - lines changed: 2, context: html, text, full: html, text