File Changes for braney
switch to commits view, user indexv234_preview to v234_base (2010-06-15 to 2010-06-22) v234
- src/hg/bedItemOverlapCount/bedItemOverlapCount.c
- lines changed 1, context: html, text, full: html, text
change usage message to be more clear
- src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf
- src/hg/encode/DAFs/2.0/haibMethylSeq.daf
- src/hg/encode/encodeLoad/doEncodeLoad.pl
- lines changed 92, context: html, text, full: html, text
fix up to handle BAM files and to remove bigWig downloads
- src/hg/encode/encodeLoad/doEncodeUnload.pl
- lines changed 29, context: html, text, full: html, text
fix up to handle BAM files and to remove bigWig downloads
- src/hg/encode/encodeValidate/config/cv.ra
- lines changed 5, context: html, text, full: html, text
try this again, add ilNA field
- lines changed 5, context: html, text, full: html, text
take out NA for insert length since it was interfering with NA for mapAlgorithm
- lines changed 20, context: html, text, full: html, text
added some words for Wold. New insert lengths and a code for TopHat as aligner
- src/hg/encode/encodeValidate/doEncodeValidate.pl
- lines changed 1, context: html, text, full: html, text
add junction type that isn't validate (yet) for Caltech junction beds.
- lines changed 3, context: html, text, full: html, text
added new file types for Caltech FPKM and insert distribution. At this point these file types are *not* validated
- src/hg/encode/validateFiles/validateFiles.c
- lines changed 17, context: html, text, full: html, text
don't check for mismatches in unmapped reads, put number of alignments on positive and negative strands out to stdout for BAM's with verbose >=2.
- src/hg/hgTracks/coverageTrack.c
- lines changed 5, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/hg/hgTracks/hgTracks.h
- lines changed 1, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/hg/hgTracks/simpleTracks.c
- lines changed 1, context: html, text, full: html, text
change a 1 to MG_BLACK, shame on me for having done this in the first place
- lines changed 19, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/hg/hgc/wiggleClick.c
- lines changed 0, context: html, text, full: html, text
change spelling of "into" to "in to"
- lines changed 18, context: html, text, full: html, text
add maxWindowToQuery setting for bigWigs.
- src/hg/inc/hvGfx.h
- lines changed 3, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/hg/makeDb/doc/encodeDccHg18/wgEncodeYaleRnaSeq.release1.notes.txt
- src/hg/makeDb/trackDb/README
- lines changed 1, context: html, text, full: html, text
add maxWindowToQuery setting for bigWigs.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.ra
- lines changed 1, context: html, text, full: html, text
add maxWindowToQuery setting for bigWigs.
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- src/hg/makeDb/trackDb/makefile
- lines changed 1, context: html, text, full: html, text
update makefile to make metaDb_public at make public time
- src/hg/makeDb/trackDb/tagTypes.tab
- lines changed 1, context: html, text, full: html, text
add maxWindowToQuery setting for bigWigs.
- src/inc/memgfx.h
- lines changed 2, context: html, text, full: html, text
add 32-bit color and write mode support to postscript driver
- src/inc/pscmGfx.h
- lines changed 3, context: html, text, full: html, text
add 32-bit color and write mode support to postscript driver
- src/inc/vGfx.h
- lines changed 4, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/lib/memgfx.c
- lines changed 1, context: html, text, full: html, text
add 32-bit color and write mode support to postscript driver
- lines changed 1, context: html, text, full: html, text
fix bug in 32-bit land where 0 was being used as MG_WHITE
- lines changed 15, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/lib/pscmGfx.c
- lines changed 44, context: html, text, full: html, text
add 32-bit color and write mode support to postscript driver
- lines changed 3, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/lib/vGfxPrivate.h
- lines changed 2, context: html, text, full: html, text
removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
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