Commits for braney
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v234_preview to v234_base (2010-06-15 to 2010-06-22) v234
- change a 1 to MG_BLACK, shame on me for having done this in the first place
- src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
- try this again, add ilNA field
- src/hg/encode/encodeValidate/config/cv.ra - lines changed 5, context: html, text, full: html, text
- take out NA for insert length since it was interfering with NA for mapAlgorithm
- src/hg/encode/encodeValidate/config/cv.ra - lines changed 5, context: html, text, full: html, text
- fix up a few problems
- src/hg/encode/DAFs/2.0/haibMethylSeq.daf - lines changed 2, context: html, text, full: html, text
- add junction type that isn't validate (yet) for Caltech junction beds.
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 1, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- add view range
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.ra - lines changed 6, context: html, text, full: html, text
- make mismatches 7
- src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf - lines changed 1, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- make mismatches 7
- src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf - lines changed 1, context: html, text, full: html, text
- change spelling of "into" to "in to"
- src/hg/hgc/wiggleClick.c - lines changed 0, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- change usage message to be more clear
- src/hg/bedItemOverlapCount/bedItemOverlapCount.c - lines changed 1, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- add 32-bit color and write mode support to postscript driver
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- fix bug in 32-bit land where 0 was being used as MG_WHITE
- add maxWindowToQuery setting for bigWigs.
- src/hg/hgc/wiggleClick.c - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/README - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- notes for release1
- src/hg/makeDb/doc/encodeDccHg18/wgEncodeYaleRnaSeq.release1.notes.txt - lines changed 68, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- added some words for Wold. New insert lengths and a code for TopHat as aligner
- src/hg/encode/encodeValidate/config/cv.ra - lines changed 20, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- added new file types for Caltech FPKM and insert distribution. At this point these file types are *not* validated
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 3, context: html, text, full: html, text
- removed Smear8 in favor of making Smears always take Colors. There are still some problems with 32 bit smears not getting the same colors as it's 8bit analog. I'm thinking this is something to do with the 0 and 1 being white and black in eight bit
- src/hg/hgTracks/coverageTrack.c - lines changed 5, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.h - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/simpleTracks.c - lines changed 19, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- update makefile to make metaDb_public at make public time
- src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- add CSHL RNA short
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 90, context: html, text, full: html, text
- don't check for mismatches in unmapped reads, put number of alignments on positive and negative strands out to stdout for BAM's with verbose >=2.
- src/hg/encode/validateFiles/validateFiles.c - lines changed 17, context: html, text, full: html, text
- Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
- fix up to handle BAM files and to remove bigWig downloads
- src/hg/encode/encodeLoad/doEncodeLoad.pl - lines changed 92, context: html, text, full: html, text
- src/hg/encode/encodeLoad/doEncodeUnload.pl - lines changed 29, context: html, text, full: html, text
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