File Changes for vsmalladi

v234_preview to v234_base (2010-06-15 to 2010-06-22) v234

• src/hg/encode/DAFs/2.0/licrMm9Histone.daf
  • lines changed 37, context: html, text, full: html, text
    Renamed file to follow pattern of lab name first in daf instead of pi
• src/hg/encode/DAFs/2.0/licrMm9Tfbs.daf
  • lines changed 37, context: html, text, full: html, text
    Renamed file to follow pattern of lab name first in daf instead of pi
• src/hg/encode/DAFs/2.0/renMm9Histone.daf
  • lines changed 37, context: html, text, full: html, text
    Renamed file to follow pattern of lab name first in daf instead of pi
  • lines changed 37, context: html, text, full: html, text
    Seperated Ren Lab Chip-Seq daf into TFBS and Histone Dafs. Added preliminary BAM validation
• src/hg/encode/DAFs/2.0/renMm9Tfbs.daf
  • lines changed 37, context: html, text, full: html, text
    Renamed file to follow pattern of lab name first in daf instead of pi
  • lines changed 6, context: html, text, full: html, text
    Seperated Ren Lab Chip-Seq daf into TFBS and Histone Dafs. Added preliminary BAM validation
• src/hg/encode/DAFs/2.0/stanfordHg19Hist.daf
  • lines changed 1, context: html, text, full: html, text
    Validated all changes in daf
  • lines changed 3, context: html, text, full: html, text
    Appended daf, as validating setting got placed on an extra line
  • lines changed 9, context: html, text, full: html, text
    Updated DAF for SYDH Histone to the one they have been using as well as updating a line to the lab names that they may use.
• src/hg/encode/encodeValidate/config/cv.ra
  • lines changed 1, context: html, text, full: html, text
    Changed Sex of LHSR cell line from F to M to be accurate according to OpenChrom Labs
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 3, context: html, text, full: html, text
    Add comments to code as per Cricket in doEncodeValidate.pl. Code commented out is better explained.
  • lines changed 3, context: html, text, full: html, text
    Add comments to code as per Cricket in doEncodeValidate.pl. Code commented out is better explained.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 537, context: html, text, full: html, text
    Added new submissions for SYDH Histone
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhHistone.ra
  • lines changed 82, context: html, text, full: html, text
    Added new submissions for SYDH Histone
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhTfbs.ra
  • lines changed 171, context: html, text, full: html, text
    Added new submission data to composite, previously available as downloads only