Commits for vsmalladi

v234_preview to v234_base (2010-06-15 to 2010-06-22) v234

• Validated all changes in daf
  • src/hg/encode/DAFs/2.0/stanfordHg19Hist.daf - lines changed 1, context: html, text, full: html, text
• Appended daf, as validating setting got placed on an extra line
  • src/hg/encode/DAFs/2.0/stanfordHg19Hist.daf - lines changed 3, context: html, text, full: html, text
• Renamed file to follow pattern of lab name first in daf instead of pi
  • src/hg/encode/DAFs/2.0/licrMm9Histone.daf - lines changed 37, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/renMm9Histone.daf - lines changed 37, context: html, text, full: html, text
• Renamed file to follow pattern of lab name first in daf instead of pi
  • src/hg/encode/DAFs/2.0/licrMm9Tfbs.daf - lines changed 37, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/renMm9Tfbs.daf - lines changed 37, context: html, text, full: html, text
• Added new submission data to composite, previously available as downloads only
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhTfbs.ra - lines changed 171, context: html, text, full: html, text
• Added new submissions for SYDH Histone
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 537, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSydhHistone.ra - lines changed 82, context: html, text, full: html, text
• Merge branch 'master' of vsmalladi@hgwdev.cse.ucsc.edu:/data/git/kent
• Merge branch 'master' of vsmalladi@hgwdev.cse.ucsc.edu:/data/git/kent
• Merge branch 'master' of vsmalladi@hgwdev.cse.ucsc.edu:/data/git/kent
• Merge branch 'master' of vsmalladi@hgwdev.cse.ucsc.edu:/data/git/kent
• Seperated Ren Lab Chip-Seq daf into TFBS and Histone Dafs. Added preliminary BAM validation
  • src/hg/encode/DAFs/2.0/renMm9Histone.daf - lines changed 37, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/renMm9Tfbs.daf - lines changed 6, context: html, text, full: html, text
• Updated DAF for SYDH Histone to the one they have been using as well as updating a line to the lab names that they may use.
  • src/hg/encode/DAFs/2.0/stanfordHg19Hist.daf - lines changed 9, context: html, text, full: html, text
• Add comments to code as per Cricket in doEncodeValidate.pl. Code commented out is better explained.
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 3, context: html, text, full: html, text
• Add comments to code as per Cricket in doEncodeValidate.pl. Code commented out is better explained.
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 3, context: html, text, full: html, text
• Merge branch 'master' of vsmalladi@hgwdev.cse.ucsc.edu:/data/git/kent
• Changed Sex of LHSR cell line from F to M to be accurate according to OpenChrom Labs
  • src/hg/encode/encodeValidate/config/cv.ra - lines changed 1, context: html, text, full: html, text