File Changes for cricket

origin/v233_branch to v234_preview (2010-06-07 to 2010-06-15) v234

• src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf
  • lines changed 15, context: html, text, full: html, text
    New daf for remapped hg18
• src/hg/encode/DAFs/2.0/cshlRnaSeq.daf
  • lines changed 53, context: html, text, full: html, text
    This is redundant with cshlLongRnaSeq.daf
• src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf
  • lines changed 15, context: html, text, full: html, text
    New daf for remapped hg18 data
• src/hg/encode/DAFs/2.0/gisDnaPet.daf
  • lines changed 6, context: html, text, full: html, text
    Work in progress, trying to get it in boefore the freeze
• src/hg/encode/DAFs/2.0/gisRnaPet.daf
  • lines changed 2, context: html, text, full: html, text
    hanged the requirement for the .ddf
  • lines changed 7, context: html, text, full: html, text
    Changed the wigs to bigWigs
  • lines changed 5, context: html, text, full: html, text
    New daf for remapped from hg18 data
• src/hg/encode/DAFs/2.0/gisRnaSeq.daf
  • lines changed 14, context: html, text, full: html, text
    New daf for remapped from hg18 data
• src/hg/encode/DAFs/2.0/haibChipSeq.daf
  • lines changed 4, context: html, text, full: html, text
    Changed -Seq to -seq in all non-conforming files
• src/hg/encode/DAFs/2.0/haibRnaSeq.daf
  • lines changed 3, context: html, text, full: html, text
    Changed -Seq to -seq in all non-conforming files
• src/hg/encode/DAFs/2.0/helicosRnaSeq.daf
  • lines changed 5, context: html, text, full: html, text
    Changed -Seq to -seq in all non-conforming files
• src/hg/encode/DAFs/2.0/renMm9Tfbs.daf
  • lines changed 3, context: html, text, full: html, text
    Changed -Seq to -seq in all non-conforming files
• src/hg/encode/DAFs/2.0/rikenCageSolexa.daf
  • lines changed 11, context: html, text, full: html, text
    New daf for remapped from hg18 data
• src/hg/encode/encodeValidate/config/fields.ra
  • lines changed 5, context: html, text, full: html, text
    added the field growthProtocol to distinguish which growth protocl is being used
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Yale Poly A was renamed Yale RNA-seq
  • lines changed 3, context: html, text, full: html, text
    Took out special character in the long label (-)
  • lines changed 4, context: html, text, full: html, text
    Changed the labels for the BU ORChID tracks
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html
  • lines changed 7, context: html, text, full: html, text
    Reworded the methods section
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.ra
  • lines changed 1, context: html, text, full: html, text
    Changed a bit more of the long label to comply with Katrina requests
  • lines changed 4, context: html, text, full: html, text
    Changed long labels to include Boston University
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyTiling.ra
  • lines changed 145, context: html, text, full: html, text
    Adding the new meta data file
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra
  • lines changed 253, context: html, text, full: html, text
    New metadata .ra for the SunyAlbany track
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Added a new composite for Suny
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSuny.ra
  • lines changed 2, context: html, text, full: html, text
    Minor typos
  • lines changed 3, context: html, text, full: html, text
    I fixed the controlled vocab line to have the right tag and I also removed view from the sort as there is only one view.
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSunyAlbanyTiling.ra
  • lines changed 111, context: html, text, full: html, text
    Added a new composite for Suny
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneST.html
  • lines changed 31, context: html, text, full: html, text
    A new track description as the old one was for Tiling Arrays
  • lines changed 142, context: html, text, full: html, text
    The correct track name for the .html file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.html
  • lines changed 142, context: html, text, full: html, text
    Track Description for the next Suny Track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyGeneST.html
  • lines changed 142, context: html, text, full: html, text
    It had the wrong track name
  • lines changed 142, context: html, text, full: html, text
    New Track Description