Commits for cricket

origin/v233_branch to v234_preview (2010-06-07 to 2010-06-15) v234

• Work in progress, trying to get it in boefore the freeze
  • src/hg/encode/DAFs/2.0/gisDnaPet.daf - lines changed 6, context: html, text, full: html, text
• Changed a bit more of the long label to comply with Katrina requests
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.ra - lines changed 1, context: html, text, full: html, text
• Reworded the methods section
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html - lines changed 7, context: html, text, full: html, text
• Changed long labels to include Boston University
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.ra - lines changed 4, context: html, text, full: html, text
• hanged the requirement for the .ddf
  • src/hg/encode/DAFs/2.0/gisRnaPet.daf - lines changed 2, context: html, text, full: html, text
• Changed the wigs to bigWigs
  • src/hg/encode/DAFs/2.0/gisRnaPet.daf - lines changed 7, context: html, text, full: html, text
• New daf for remapped from hg18 data
  • src/hg/encode/DAFs/2.0/gisRnaPet.daf - lines changed 5, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/gisRnaSeq.daf - lines changed 14, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/rikenCageSolexa.daf - lines changed 11, context: html, text, full: html, text
• Changed -Seq to -seq in all non-conforming files
  • src/hg/encode/DAFs/2.0/haibChipSeq.daf - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibRnaSeq.daf - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/helicosRnaSeq.daf - lines changed 5, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/renMm9Tfbs.daf - lines changed 3, context: html, text, full: html, text
• New daf for remapped hg18 data
  • src/hg/encode/DAFs/2.0/cshlShortRnaSeq.daf - lines changed 15, context: html, text, full: html, text
• New daf for remapped hg18
  • src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf - lines changed 15, context: html, text, full: html, text
• This is redundant with cshlLongRnaSeq.daf
  • src/hg/encode/DAFs/2.0/cshlRnaSeq.daf - lines changed 53, context: html, text, full: html, text
• Yale Poly A was renamed Yale RNA-seq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
• Took out special character in the long label (-)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
• Changed the labels for the BU ORChID tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 4, context: html, text, full: html, text
• Minor typos
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSuny.ra - lines changed 2, context: html, text, full: html, text
• Adding the new meta data file
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyTiling.ra - lines changed 145, context: html, text, full: html, text
• Added a new composite for Suny
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSunyAlbanyTiling.ra - lines changed 111, context: html, text, full: html, text
• Track Description for the next Suny Track
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.html - lines changed 142, context: html, text, full: html, text
• A new track description as the old one was for Tiling Arrays
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneST.html - lines changed 31, context: html, text, full: html, text
• It had the wrong track name
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyGeneST.html - lines changed 142, context: html, text, full: html, text
• The correct track name for the .html file
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneST.html - lines changed 142, context: html, text, full: html, text
• New Track Description
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyGeneST.html - lines changed 142, context: html, text, full: html, text
• I fixed the controlled vocab line to have the right tag and I also removed view from the sort as there is only one view.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSuny.ra - lines changed 3, context: html, text, full: html, text
• New metadata .ra for the SunyAlbany track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra - lines changed 253, context: html, text, full: html, text
• added the field growthProtocol to distinguish which growth protocl is being used
  • src/hg/encode/encodeValidate/config/fields.ra - lines changed 5, context: html, text, full: html, text