File Changes for tdreszer

origin/v233_branch to v234_preview (2010-06-07 to 2010-06-15) v234

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 6, context: html, text, full: html, text
    Swap '.' for offending ';' in ddf fields
• src/hg/inc/mdb.h
  • lines changed 6, context: html, text, full: html, text
    Added mdbObjsPrintUpdateLines and mdbObjsSortOnVars to aid special advanced mdbPrint options
• src/hg/lib/mdb.c
  • lines changed 145, context: html, text, full: html, text
    Added mdbObjsPrintUpdateLines and mdbObjsSortOnVars to aid special advanced mdbPrint options
• src/hg/makeDb/doc/encodeDccHg18/broadBernstein.txt
  • lines changed 193, context: html, text, full: html, text
    These are running docs that I need to check in before git
• src/hg/makeDb/doc/encodeDccHg18/dukeUtaUncCrawford.txt
  • lines changed 311, context: html, text, full: html, text
    These are running docs that I need to check in before git
• src/hg/makeDb/doc/encodeDccHg18/haibChipSeq.txt
  • lines changed 1647, context: html, text, full: html, text
    These are running docs that I need to check in before git
• src/hg/makeDb/doc/encodeDccHg18/myers.txt
  • lines changed 1, context: html, text, full: html, text
    These are running docs that I need to check in before git
• src/hg/makeDb/doc/encodeDccHg18/uwStam.txt
  • lines changed 437, context: html, text, full: html, text
    These are running docs that I need to check in before git
• src/hg/makeDb/doc/encodeDccHg18/yaleDavisHarvardSnyder.txt
  • lines changed 1698, context: html, text, full: html, text
    These are running docs that I need to check in before git
• src/hg/makeDb/mdbUpdate/mdbPrint.c
  • lines changed 66, context: html, text, full: html, text
    Added special option to print mdbUpdate lines to assist in importing vars from one db.mdb to another.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
  • lines changed 99, context: html, text, full: html, text
    Fixed RawSignal fileNames which should point to their Alignments parent
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
  • lines changed 14, context: html, text, full: html, text
    HudsonAlpha responded that the 2007 paper is the right ref.
  • lines changed 1, context: html, text, full: html, text
    Tiny change
  • lines changed 26, context: html, text, full: html, text
    Adjustments/fixes requested by Katrina
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra
  • lines changed 81, context: html, text, full: html, text
    Changed the default subtracks and a couple of short labels as well
  • lines changed 2, context: html, text, full: html, text
    The new longLabelClip setting is definitely not ready to go out
  • lines changed 4, context: html, text, full: html, text
    Tightened the signal range as per Katrina's request
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 3, context: html, text, full: html, text
    Added missing mdb RA files
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 533, context: html, text, full: html, text
    Initial checkin of Methyl that leaked in during mini-freeze of TFBS
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 2555, context: html, text, full: html, text
    Post mini-freeze update with wigs removed and dates updated
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 7, context: html, text, full: html, text
    Clensed semicolons from labVersion
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 12, context: html, text, full: html, text
    Clensed semicolons from labVersion
  • lines changed 4, context: html, text, full: html, text
    Imported dateSubmitted from hg18 for one remapped submission
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 25, context: html, text, full: html, text
    More dates have been imported
  • lines changed 156, context: html, text, full: html, text
    Imported dates from hg18
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    Adding longLabelClip now even though the feature is not ready for prime time. Just trying to beat git.
• src/lib/cheapcgi.c
  • lines changed 2, context: html, text, full: html, text
    Minor change to waitMask CSS definition. Avoids silent warnings in some browsers.