Commits for tdreszer

origin/v233_branch to v234_preview (2010-06-07 to 2010-06-15) v234

• Minor change to waitMask CSS definition. Avoids silent warnings in some browsers.
  • src/lib/cheapcgi.c - lines changed 2, context: html, text, full: html, text
• Adding longLabelClip now even though the feature is not ready for prime time. Just trying to beat git.
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• These are running docs that I need to check in before git
  • src/hg/makeDb/doc/encodeDccHg18/broadBernstein.txt - lines changed 193, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg18/dukeUtaUncCrawford.txt - lines changed 311, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg18/haibChipSeq.txt - lines changed 1647, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg18/myers.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg18/uwStam.txt - lines changed 437, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg18/yaleDavisHarvardSnyder.txt - lines changed 1698, context: html, text, full: html, text
• Changed the default subtracks and a couple of short labels as well
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 81, context: html, text, full: html, text
• Added special option to print mdbUpdate lines to assist in importing vars from one db.mdb to another.
  • src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 66, context: html, text, full: html, text
• Added mdbObjsPrintUpdateLines and mdbObjsSortOnVars to aid special advanced mdbPrint options
  • src/hg/inc/mdb.h - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/mdb.c - lines changed 145, context: html, text, full: html, text
• Fixed RawSignal fileNames which should point to their Alignments parent
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 99, context: html, text, full: html, text
• HudsonAlpha responded that the 2007 paper is the right ref.
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html - lines changed 14, context: html, text, full: html, text
• Tiny change
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html - lines changed 1, context: html, text, full: html, text
• Adjustments/fixes requested by Katrina
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html - lines changed 26, context: html, text, full: html, text
• Added missing mdb RA files
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 3, context: html, text, full: html, text
• More dates have been imported
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 25, context: html, text, full: html, text
• Imported dates from hg18
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 156, context: html, text, full: html, text
• Swap '.' for offending ';' in ddf fields
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 6, context: html, text, full: html, text
• Clensed semicolons from labVersion
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 12, context: html, text, full: html, text
• Imported dateSubmitted from hg18 for one remapped submission
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
• Initial checkin of Methyl that leaked in during mini-freeze of TFBS
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 533, context: html, text, full: html, text
• Post mini-freeze update with wigs removed and dates updated
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 2555, context: html, text, full: html, text
• The new longLabelClip setting is definitely not ready to go out
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 2, context: html, text, full: html, text
• Tightened the signal range as per Katrina's request
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 4, context: html, text, full: html, text