File Changes for braney
switch to commits view, user indexv235_preview to v235_base (2010-06-29 to 2010-07-06) v235
- src/ameme/ameme.c
- src/ameme/makefile
- src/hg/encode/validateFiles/validateFiles.c
- lines changed 10, context: html, text, full: html, text
fix totally brain dead bug that my code buddy should have caught (take that anonymous buddy!). Also add option for testing
- src/hg/hgTracks/cds.c
- lines changed 7, context: html, text, full: html, text
make 32-bit PNG the default, use painter's algorithm for mRNA track
- src/hg/makeDb/doc/encodeDccHg19/gencodeV4.txt
- lines changed 8, context: html, text, full: html, text
download new gtf files from FelixK. Need to re-load and change release notes
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra
- lines changed 20, context: html, text, full: html, text
UCSF Brain Methyl: take out Brain from individual tracks long and short labels, change RNAseq to RNA-seq
- lines changed 3, context: html, text, full: html, text
change some stuff that Mary wanted
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
- lines changed 1, context: html, text, full: html, text
add wgEncodeHaibMethylSeq.ra
- lines changed 4, context: html, text, full: html, text
add some ra files to the makefile
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
- lines changed 595, context: html, text, full: html, text
metadata for CSHL Small RNA-seq
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra
- lines changed 829, context: html, text, full: html, text
add Haib MethylSeq to hg19
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 1, context: html, text, full: html, text
add Haib MethylSeq to hg19
- lines changed 1, context: html, text, full: html, text
first pass at CSHL short RNA
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCaltechRnaSeq.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra
- lines changed 393, context: html, text, full: html, text
first pass at CSHL short RNA
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra
- lines changed 16, context: html, text, full: html, text
add Haib MethylSeq to hg19
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra
- lines changed 1, context: html, text, full: html, text
add to RNA-seq supertrack
- src/hg/phyloGif/phyloGif.c
- lines changed 12, context: html, text, full: html, text
set up HTML to have the right file type
- lines changed 7, context: html, text, full: html, text
fix phyloGif to write out PNG, and make sure no one can write out GIF if USE_PNG is set
- src/inc/common.mk
- lines changed 5, context: html, text, full: html, text
make 32-bit PNG the default, use painter's algorithm for mRNA track
- src/lib/gifLabel.c
- lines changed 7, context: html, text, full: html, text
use png instead of gif if USE_PNG is set
- src/lib/gifwrite.c
- lines changed 2, context: html, text, full: html, text
fix phyloGif to write out PNG, and make sure no one can write out GIF if USE_PNG is set
- src/lib/pngwrite.c
- lines changed 2, context: html, text, full: html, text
don't fiddle with palette transparency if we're 32-bit
- src/tracks/tracks.c
- src/weblet/counter/counter.c
- src/weblet/counter/makefile
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