Commits for braney
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v235_preview to v235_base (2010-06-29 to 2010-07-06) v235
- more GIF to PNG changes
- src/weblet/counter/counter.c - lines changed 5, context: html, text, full: html, text
- src/weblet/counter/makefile - lines changed 1, context: html, text, full: html, text
- add GIS RNA-seq data
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 229, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra - lines changed 173, context: html, text, full: html, text
- add to RNA-seq supertrack
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 1, context: html, text, full: html, text
- forgot to commit this
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra - lines changed 123, context: html, text, full: html, text
- add wgEncodeHaibMethylSeq.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
- add Haib MethylSeq to hg19
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra - lines changed 829, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra - lines changed 16, context: html, text, full: html, text
- add some riken tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 970, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 494, context: html, text, full: html, text
- use PNG if USE_PNG
- UCSF Brain Methyl: take out Brain from individual tracks long and short labels, change RNAseq to RNA-seq
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 20, context: html, text, full: html, text
- change some stuff that Mary wanted
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 3, context: html, text, full: html, text
- download new gtf files from FelixK. Need to re-load and change release notes
- src/hg/makeDb/doc/encodeDccHg19/gencodeV4.txt - lines changed 8, context: html, text, full: html, text
- switch to using PNG
- set up HTML to have the right file type
- src/hg/phyloGif/phyloGif.c - lines changed 12, context: html, text, full: html, text
- don't fiddle with palette transparency if we're 32-bit
- fix phyloGif to write out PNG, and make sure no one can write out GIF if USE_PNG is set
- src/hg/phyloGif/phyloGif.c - lines changed 7, context: html, text, full: html, text
- use png instead of gif if USE_PNG is set
- add some ra files to the makefile
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 4, context: html, text, full: html, text
- metadata for CSHL Small RNA-seq
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 595, context: html, text, full: html, text
- make 32-bit PNG the default, use painter's algorithm for mRNA track
- first pass at CSHL short RNA
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra - lines changed 393, context: html, text, full: html, text
- add noInherit on
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCaltechRnaSeq.ra - lines changed 1, context: html, text, full: html, text
- fix totally brain dead bug that my code buddy should have caught (take that anonymous buddy!). Also add option for testing
- src/hg/encode/validateFiles/validateFiles.c - lines changed 10, context: html, text, full: html, text
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