File Changes for galt

v234_base to v235_preview (2010-06-22 to 2010-06-29) v235

• src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb
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    doubling download timeout to 20 hours
• src/hg/htdocs/ENCODE/releaseLog.html
  • lines changed 1, context: html, text, full: html, text
    "Encode release log update"
  • lines changed 1, context: html, text, full: html, text
    "Encode release log update"
  • lines changed 1, context: html, text, full: html, text
    "Encode release log update"
  • lines changed 1, context: html, text, full: html, text
    "Encode release log update"
  • lines changed 1, context: html, text, full: html, text
    "Encode release log update"
  • lines changed 1, context: html, text, full: html, text
    "Encode release log update"
  • lines changed 1, context: html, text, full: html, text
    "Encode release log update"
• src/hg/htdocs/goldenPath/releaseLog.html
  • lines changed 1, context: html, text, full: html, text
    "Release log update"
  • lines changed 1, context: html, text, full: html, text
    "Release log update"
  • lines changed 1, context: html, text, full: html, text
    "Release log update"
  • lines changed 1, context: html, text, full: html, text
    "Release log update"
  • lines changed 2, context: html, text, full: html, text
    "Release log update"
  • lines changed 15, context: html, text, full: html, text
    "Release log update"
  • lines changed 139, context: html, text, full: html, text
    "Release log update"
• src/inc/net.h
  • lines changed 4, context: html, text, full: html, text
    initial paraFetch work - the fast multiple connection parallel downloader
• src/lib/net.c
  • lines changed 28, context: html, text, full: html, text
    fixed minor bug needing to check eof right away; also added restartTotalDownloaded so that totalDownloaded gets tracked properly on auto-restart
  • lines changed 107, context: html, text, full: html, text
    adding auto-restart
  • lines changed 18, context: html, text, full: html, text
    adding date so that restarts can compare to help confirm that the file has not changed
  • lines changed 7, context: html, text, full: html, text
    adding URL and fileSize to status file for verification in future restarts
  • lines changed 16, context: html, text, full: html, text
    adding more triggers to write status file whenever 100MB of data are downloaded
  • lines changed 39, context: html, text, full: html, text
    added writeParaFetchStatus for both restarting failed downloads and reporting progress
  • lines changed 20, context: html, text, full: html, text
    more re-arranging to support retrying unfinished parts
  • lines changed 80, context: html, text, full: html, text
    re-arranging to support retrying unfinished parts
  • lines changed 22, context: html, text, full: html, text
    using tempname equal to output name with ".paraFetch" extension until download is complete, then rename the tempfile to the real name when all done
  • lines changed 249, context: html, text, full: html, text
    initial paraFetch work - the fast multiple connection parallel downloader
  • lines changed 1, context: html, text, full: html, text
    https should have been there long ago
• src/lib/tests/fetchUrlTest.c
  • lines changed 44, context: html, text, full: html, text
    adding capability to grab a url without the http response header embedded
• src/lib/tests/makefile
  • lines changed 3, context: html, text, full: html, text
    initial paraFetch utility checkin
  • lines changed 3, context: html, text, full: html, text
    initial paraFetch work - the fast multiple connection parallel downloader
• src/lib/tests/paraFetch.c
  • lines changed 40, context: html, text, full: html, text
    initial paraFetch utility checkin
  • lines changed 40, context: html, text, full: html, text
    initial paraFetch work - the fast multiple connection parallel downloader
• src/utils/git-reports/git-reports.c
  • lines changed 2, context: html, text, full: html, text
    all the way out to one million matches old cvs reports
  • lines changed 2, context: html, text, full: html, text
    adding more context for some big files
  • lines changed 9, context: html, text, full: html, text
    temporary workaround for an initial commit which has no parent
• src/utils/git-reports/makefile
  • lines changed 1, context: html, text, full: html, text
    allow to get arguments from parent make commands
• src/utils/paraFetch/makefile
  • lines changed 21, context: html, text, full: html, text
    initial paraFetch utility checkin
• src/utils/paraFetch/paraFetch.c
  • lines changed 6, context: html, text, full: html, text
    paraFetch utility should exit 1 on failure to let caller know
  • lines changed 40, context: html, text, full: html, text
    initial paraFetch utility checkin
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v235 preview
• src/utils/qa/weeklybld/buildGitReports.csh
  • lines changed 1, context: html, text, full: html, text
    fixing branch report
  • lines changed 5, context: html, text, full: html, text
    fixing branch report
• src/utils/qa/weeklybld/buildZip.csh
  • lines changed 1, context: html, text, full: html, text
    faster, pussycat
  • lines changed 4, context: html, text, full: html, text
    fixing zip paths
• src/utils/qa/weeklybld/cherryPickCommits.csh
  • lines changed 2, context: html, text, full: html, text
    error message belows with git show not git cherry-pick
  • lines changed 2, context: html, text, full: html, text
    adding another common error condition
  • lines changed 15, context: html, text, full: html, text
    little fix
  • lines changed 4, context: html, text, full: html, text
    minor tweaks
  • lines changed 175, context: html, text, full: html, text
    first attempt at git automated patching using the cherry-pick method
• src/utils/qa/weeklybld/coBranch.csh
  • lines changed 5, context: html, text, full: html, text
    fixing build scripts to not use confusing var $dir
• src/utils/qa/weeklybld/doHgNearTestRobot.csh
  • lines changed 2, context: html, text, full: html, text
    removing unneeded single quotes around email subject in several build scripts
• src/utils/qa/weeklybld/doHgTablesTestRobot.csh
  • lines changed 2, context: html, text, full: html, text
    removing unneeded single quotes around email subject in several build scripts
• src/utils/qa/weeklybld/doJavaUtilBuild.csh
  • lines changed 2, context: html, text, full: html, text
    fix typo in doJavaUtilBuild.csh
  • lines changed 3, context: html, text, full: html, text
    fixing build scripts to not use confusing var $dir
• src/utils/qa/weeklybld/doLiftOverTestRobot.csh
  • lines changed 1, context: html, text, full: html, text
    little path fixes to these due to modifying JAVABUILD setting earlier
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 6, context: html, text, full: html, text
    check if we are on the master branch before running
  • lines changed 2, context: html, text, full: html, text
    removing unneeded single quotes around email subject in several build scripts
  • lines changed 1, context: html, text, full: html, text
    fixing typo
• src/utils/qa/weeklybld/doSearchRobot.csh
  • lines changed 2, context: html, text, full: html, text
    removing unneeded single quotes around email subject in several build scripts
• src/utils/qa/weeklybld/doTrackCheckRobot.csh
  • lines changed 1, context: html, text, full: html, text
    fix path to full.props
  • lines changed 1, context: html, text, full: html, text
    little path fixes to these due to modifying JAVABUILD setting earlier
• src/utils/qa/weeklybld/makeUserApps.csh
  • lines changed 6, context: html, text, full: html, text
    more path oddness
  • lines changed 3, context: html, text, full: html, text
    fixing build scripts to not use confusing var $dir
• src/utils/qa/weeklybld/tagBeta.csh
  • lines changed 43, context: html, text, full: html, text
    convert to git - uses special merge -s ours
• src/utils/wigCorrelate/makefile
  • lines changed 1, context: html, text, full: html, text
    fixing zlib dependencies in makefile