File Changes for larrym

v236_preview to v236_base (2010-07-13 to 2010-07-20) v236

• src/hg/hgGateway/hgGateway.c
  • lines changed 7, context: html, text, full: html, text
    fix spacing in find tracks
  • lines changed 3, context: html, text, full: html, text
    add find tracks button
• src/hg/hgTracks/config.c
  • lines changed 6, context: html, text, full: html, text
    add find tracks button
• src/hg/hgTracks/factorSource.c
  • lines changed 4, context: html, text, full: html, text
    check for existence of wgEncodeRegTfbsClusteredMotifs
  • lines changed 25, context: html, text, full: html, text
    look for high-confidence motifs in wgEncodeRegTfbsClusteredMotifs
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    add #include searchTracks.h
  • lines changed 13, context: html, text, full: html, text
    move find tracks to the left and only shown when functionality is supported for this db
• src/hg/hgTracks/hgTracks.h
  • lines changed 3, context: html, text, full: html, text
    move TRACK_SEARCH #define to inc/searchTracks.h
  • lines changed 1, context: html, text, full: html, text
    oops; I checked in previous copy with TRACK_SEARCH turned on
  • lines changed 3, context: html, text, full: html, text
    move #define searchTracks to searchTracks.h
• src/hg/hgTracks/mainMain.c
  • lines changed 1, context: html, text, full: html, text
    add #include searchTracks.h
• src/hg/hgTracks/searchTracks.c
  • lines changed 5, context: html, text, full: html, text
    modify temporary comments list
  • lines changed 6, context: html, text, full: html, text
    refactor some code into lib/searchTracks.c and some code-review changes
  • lines changed 15, context: html, text, full: html, text
    ui tweaking
• src/hg/hgc/hgc.h
  • lines changed 3, context: html, text, full: html, text
    add motifMultipleHitsSection
• src/hg/hgc/regMotif.c
  • lines changed 23, context: html, text, full: html, text
    add motifMultipleHitsSection
• src/hg/inc/searchTracks.h
  • lines changed 3, context: html, text, full: html, text
    move TRACK_SEARCH #define to inc/searchTracks.h
  • lines changed 2, context: html, text, full: html, text
    add #define searchTracks
  • lines changed 16, context: html, text, full: html, text
    searchTracks routines which are shared b/n CGIs
• src/hg/js/hgTracks.js
  • lines changed 8, context: html, text, full: html, text
    changeSearchVisibilityPopups
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    add searchTracks.o
• src/hg/lib/searchTracks.c
  • lines changed 4, context: html, text, full: html, text
    move TRACK_SEARCH #define to inc/searchTracks.h
  • lines changed 19, context: html, text, full: html, text
    searchTracks routines which are shared b/n CGIs
• src/hg/utils/motifFinder/motifFinder.c
  • lines changed 40, context: html, text, full: html, text
    default to markov0 for background
  • lines changed 25, context: html, text, full: html, text
    pick hight scoring hit within sets of overlapping hits
• src/hg/utils/mutationClassifier/mutationClassifier.c
  • lines changed 10, context: html, text, full: html, text
    default to mark0 for background
• src/inc/dnaMotif.h
  • lines changed 3, context: html, text, full: html, text
    add dnaMotifBitScoreWithMark0Bg
• src/lib/cheapcgi.c
  • lines changed 7, context: html, text, full: html, text
    change cgiMakeDropListClassWithStyleAndJavascript to tolerate all permuations of NULL for parameters
• src/lib/dnaMotif.c
  • lines changed 21, context: html, text, full: html, text
    add dnaMotifBitScoreWithMark0Bg