Commits for larrym

v236_preview to v236_base (2010-07-13 to 2010-07-20) v236

• fix spacing in find tracks
  • src/hg/hgGateway/hgGateway.c - lines changed 7, context: html, text, full: html, text
• move TRACK_SEARCH #define to inc/searchTracks.h
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/inc/searchTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/searchTracks.c - lines changed 4, context: html, text, full: html, text
• oops; I checked in previous copy with TRACK_SEARCH turned on
  • src/hg/hgTracks/hgTracks.h - lines changed 1, context: html, text, full: html, text
• modify temporary comments list
  • src/hg/hgTracks/searchTracks.c - lines changed 5, context: html, text, full: html, text
• move #define searchTracks to searchTracks.h
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
• add searchTracks.o
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
• add #define searchTracks
  • src/hg/inc/searchTracks.h - lines changed 2, context: html, text, full: html, text
• add #include searchTracks.h
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/mainMain.c - lines changed 1, context: html, text, full: html, text
• add find tracks button
  • src/hg/hgTracks/config.c - lines changed 6, context: html, text, full: html, text
• add find tracks button
  • src/hg/hgGateway/hgGateway.c - lines changed 3, context: html, text, full: html, text
• searchTracks routines which are shared b/n CGIs
  • src/hg/inc/searchTracks.h - lines changed 16, context: html, text, full: html, text
  • src/hg/lib/searchTracks.c - lines changed 19, context: html, text, full: html, text
• refactor some code into lib/searchTracks.c and some code-review changes
  • src/hg/hgTracks/searchTracks.c - lines changed 6, context: html, text, full: html, text
• move find tracks to the left and only shown when functionality is supported for this db
  • src/hg/hgTracks/hgTracks.c - lines changed 13, context: html, text, full: html, text
• add dnaMotifBitScoreWithMark0Bg
  • src/lib/dnaMotif.c - lines changed 21, context: html, text, full: html, text
• default to mark0 for background
  • src/hg/utils/mutationClassifier/mutationClassifier.c - lines changed 10, context: html, text, full: html, text
• add dnaMotifBitScoreWithMark0Bg
  • src/inc/dnaMotif.h - lines changed 3, context: html, text, full: html, text
• default to markov0 for background
  • src/hg/utils/motifFinder/motifFinder.c - lines changed 40, context: html, text, full: html, text
• check for existence of wgEncodeRegTfbsClusteredMotifs
  • src/hg/hgTracks/factorSource.c - lines changed 4, context: html, text, full: html, text
• ui tweaking
  • src/hg/hgTracks/searchTracks.c - lines changed 15, context: html, text, full: html, text
• look for high-confidence motifs in wgEncodeRegTfbsClusteredMotifs
  • src/hg/hgTracks/factorSource.c - lines changed 25, context: html, text, full: html, text
• changeSearchVisibilityPopups
  • src/hg/js/hgTracks.js - lines changed 8, context: html, text, full: html, text
• change cgiMakeDropListClassWithStyleAndJavascript to tolerate all permuations of NULL for parameters
  • src/lib/cheapcgi.c - lines changed 7, context: html, text, full: html, text
• add motifMultipleHitsSection
  • src/hg/hgc/hgc.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/regMotif.c - lines changed 23, context: html, text, full: html, text
• pick hight scoring hit within sets of overlapping hits
  • src/hg/utils/motifFinder/motifFinder.c - lines changed 25, context: html, text, full: html, text