Commits for cricket

v237_preview to v237_base (2010-07-27 to 2010-08-03) v237

• Added the methods changes from Atif Shahab
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.html - lines changed 15, context: html, text, full: html, text
• removed the reference to all raw signal
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.html - lines changed 3, context: html, text, full: html, text
• removed the reference to split alignments
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.html - lines changed 3, context: html, text, full: html, text
• The correct magic number
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 57, context: html, text, full: html, text
• added origAssembly and corrected dates
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 176, context: html, text, full: html, text
• The meta data is changed to reflect the orig assembly and the correct dates.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 18, context: html, text, full: html, text
• Revert "These files have all had origAssembly added, but they will need to have the release date modified"The CshlShort had affy informaiton in it. I need to start this over. This reverts commit 196e751a37514efca4687d4d0e50fb4ca8e71a8e. Conflicts: src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 1758, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 137, context: html, text, full: html, text
• Changed this file to be lowercase name.
  • src/hg/encode/DAFs/2.0/YdhrRnaSeq.daf - lines changed 59, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/ydhrRnaSeq.daf - lines changed 58, context: html, text, full: html, text
• Changed the metadata and the short labels for GisRnaSeq
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra - lines changed 46, context: html, text, full: html, text
• These files have all had origAssembly added, but they will need to have the release date modified
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 1759, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 137, context: html, text, full: html, text
• Added line break for viewing of vendorIds
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 3, context: html, text, full: html, text
• added a space
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra - lines changed 0, context: html, text, full: html, text
• Changed the long and short labels to include antibody
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra - lines changed 31, context: html, text, full: html, text
• File made on accident
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyTiling.ra - lines changed 145, context: html, text, full: html, text
• Changed the antibody from upper case to lower case.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra - lines changed 1, context: html, text, full: html, text
• This commit really has the metaDb changes for SunyAlbanyTiling. With the addition of antibody as well as ripTgtProtien.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyTiling.ra - lines changed 9, context: html, text, full: html, text
• This has the ripTgtProtien added as the antibody as well. Then It can be used either way we decide to go with the cv.ra
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSunyalbanyRnaGeneChip.ra - lines changed 8, context: html, text, full: html, text
• This is the metadata for Suny updated with the antibody, the ripTgtProtien has not been removed
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyTiling.ra - lines changed 145, context: html, text, full: html, text
• Checking in the most recent fiddles with these DAFs
  • src/hg/encode/DAFs/2.0/cshlLongRnaSeq.daf - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibMethylRrbs.daf - lines changed 17, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/ydhrRnaSeq.daf - lines changed 64, context: html, text, full: html, text
• I have changed the names of the include files to match the standard. I also have been working on the short labels for the Suny tracks.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSuny.ra - lines changed 246, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeSunyAlbanyTiling.ra - lines changed 111, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra - lines changed 246, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra - lines changed 111, context: html, text, full: html, text
• Changed the antibody display to accept semi-colon separated lists for the vendorName, vendorId, and orderUrl.
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 52, context: html, text, full: html, text