File Changes for braney

v237_base to v238_preview (2010-08-03 to 2010-08-10) v238

• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • lines changed 3, context: html, text, full: html, text
    change .bw to .bigWig
  • lines changed 4, context: html, text, full: html, text
    fix typos in preamble
• src/hg/encode/encodeLoad/doEncodeUnload.pl
  • lines changed 1, context: html, text, full: html, text
    change .bw to .bigWig
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    draw in MG_BLACK, not 1 (which is white in 32-bit)
• src/hg/hgc/hgc.c
  • lines changed 7, context: html, text, full: html, text
    put gencode ensembl transcript id link in trackDb instead of hard-coding it
• src/hg/lib/trackDbCustom.c
  • lines changed 1, context: html, text, full: html, text
    change back to old code
• src/hg/makeDb/doc/encodeDccHg19/gencodeV4.txt
  • lines changed 9, context: html, text, full: html, text
    fix up some gencode table naming inconsistencies
• src/hg/makeDb/schema/all.joiner
  • lines changed 14, context: html, text, full: html, text
    add association between hg19 Gencode class and GTF tables
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • lines changed 73, context: html, text, full: html, text
    drop alignments from UCSF Brain Methyl since they aren't correct
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    fix link out for Gencode V3
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.ra
  • lines changed 13, context: html, text, full: html, text
    change Myers to HudsonAlpha
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    metadata for hg19 gencodeV4
  • lines changed 1, context: html, text, full: html, text
    added wgEncodeMapability
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra
  • lines changed 7, context: html, text, full: html, text
    add submission id for gencode
  • lines changed 89, context: html, text, full: html, text
    metadata for hg19 gencodeV4
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeMapability.ra
  • lines changed 85, context: html, text, full: html, text
    put this in metaDb
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 3, context: html, text, full: html, text
    take out metadata for hg19 wgEncodeGencode
  • lines changed 1, context: html, text, full: html, text
    take out spurious url variable
  • lines changed 2, context: html, text, full: html, text
    fix up some gencode table naming inconsistencies
  • lines changed 2, context: html, text, full: html, text
    put gencode ensembl transcript id link in trackDb instead of hard-coding it
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 2, context: html, text, full: html, text
    put gencode ensembl transcript id link in trackDb instead of hard-coding it
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v238 preview