File Changes for hiram

v237_base to v238_preview (2010-08-03 to 2010-08-10) v238

• src/hg/lib/customFactory.c
  • lines changed 2, context: html, text, full: html, text
    add db setting to table browser custom tracks
  • lines changed 4, context: html, text, full: html, text
    checking incoming bed files for legal coordinates
• src/hg/lib/customTrack.c
  • lines changed 1, context: html, text, full: html, text
    was missing wibFile setting on track line for cts from table browser
• src/hg/makeDb/trackDb/human/hg18/haplotypeLocations.html
  • lines changed 9, context: html, text, full: html, text
    adding haplotype position tracks to hg19 and hg18 and lift over chain experiments
• src/hg/makeDb/trackDb/human/hg18/hg19ContigDiff.html
  • lines changed 31, context: html, text, full: html, text
    adding difference tracks hg18 to hg19 to hg18
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • lines changed 23, context: html, text, full: html, text
    adding haplotype position tracks to hg19 and hg18 and lift over chain experiments
  • lines changed 7, context: html, text, full: html, text
    adding difference tracks hg18 to hg19 to hg18
• src/hg/makeDb/trackDb/human/hg19/hg18ContigDiff.html
  • lines changed 31, context: html, text, full: html, text
    adding difference tracks hg18 to hg19 to hg18
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding the two chrM sequences to haplotype track
  • lines changed 2, context: html, text, full: html, text
    adding haplotype position tracks to hg19 and hg18 and lift over chain experiments
  • lines changed 7, context: html, text, full: html, text
    adding difference tracks hg18 to hg19 to hg18
• src/hg/useCount/useCount.c
  • lines changed 3, context: html, text, full: html, text
    use proper dateTime result string
• src/hg/utils/automation/EnsGeneAutomate.pm
  • lines changed 168, context: html, text, full: html, text
    updated with v59 definitions
• src/hg/utils/automation/doSameSpeciesLiftOver.pl
  • lines changed 2, context: html, text, full: html, text
    using an overlap of 500 bases during the 5K split
• src/hg/utils/phyloTrees/chainNet.pl
  • lines changed 1, context: html, text, full: html, text
    should be oviAri not oviAra on newAssembliesList
• src/product/scripts/trashCleanMonitor.csh
  • lines changed 2, context: html, text, full: html, text
    remove the safety exit 0, this is now live
  • lines changed 35, context: html, text, full: html, text
    finalized versions ready to go
  • lines changed 1, context: html, text, full: html, text
    omit reference to my location
  • lines changed 50, context: html, text, full: html, text
    trash cleaner now in two parts to verify OK
• src/product/scripts/trashCleaner.csh
  • lines changed 49, context: html, text, full: html, text
    finalized versions ready to go
  • lines changed 27, context: html, text, full: html, text
    trash cleaner now in two parts to verify OK
  • lines changed 225, context: html, text, full: html, text
    initial contents of single trash cleaner all in one
• src/product/scripts/trashCleaning.sh
  • lines changed 124, context: html, text, full: html, text
    removed older trashCleaning.sh script