Commits for braney

v238_base to v239_preview (2010-08-17 to 2010-08-24) v239

• change the filenames to be *.bigWig
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeMapability.ra - lines changed 7, context: html, text, full: html, text
• remove metadata from Mapabililty composite
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 6, context: html, text, full: html, text
• change code that was allocating a 13mb array on the stack to use a scratch area instead
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 15, context: html, text, full: html, text
• oops, meant to use needLargeMem to avoid the memsettomg tp -
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 1, context: html, text, full: html, text
• fix another bonehead move (left out a '/')
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 1, context: html, text, full: html, text
• update subId to hg19 submission id
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAffyRnaChip.ra - lines changed 105, context: html, text, full: html, text
• shell of a program to validate cv.ra and make sure metadata is compliant
  • src/hg/encode/validateCv/makefile - lines changed 18, context: html, text, full: html, text
  • src/hg/encode/validateCv/validateCv.c - lines changed 39, context: html, text, full: html, text
• add usage message (woooo!)
  • src/hg/encode/validateCv/validateCv.c - lines changed 15, context: html, text, full: html, text
• take out flags that were preventing the most recent copy from being installed
  • src/hg/encode/encodeLoad/makefile - lines changed 1, context: html, text, full: html, text
• get wgEncodeGencode into it's own include file
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 144, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencode.ra - lines changed 142, context: html, text, full: html, text
• re-did Human Proteins.
  • src/hg/makeDb/doc/felCat4.txt - lines changed 14, context: html, text, full: html, text
• fix up label for the 2way
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencode.ra - lines changed 1, context: html, text, full: html, text
• add a few missing variables
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra - lines changed 5, context: html, text, full: html, text
• v239 preview
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text