File Changes for hiram

v238_base to v239_preview (2010-08-17 to 2010-08-24) v239

• src/hg/estOrient/makefile
  • lines changed 2, context: html, text, full: html, text
    watch out for MYSQLIBS to have other stuff there than just library names
• src/hg/makeDb/doc/blastTab.txt
  • lines changed 320, context: html, text, full: html, text
    rebuilding all blast tabs on account of new Ensembl v59 genes
  • lines changed 4, context: html, text, full: html, text
    add not about scripts to run everything
  • lines changed 85, context: html, text, full: html, text
    updated with ce6 sacCer2 and dm3 recipBest
  • lines changed 40, context: html, text, full: html, text
    adding danRer6 recip best
• src/hg/makeDb/doc/hg19.txt
  • lines changed 486, context: html, text, full: html, text
    documenting patch2 update procedure
• src/hg/makeDb/trackDb/human/hg19/altSequence.html
  • lines changed 16, context: html, text, full: html, text
    changing haplotypeLocations track to altSequence
• src/hg/makeDb/trackDb/human/hg19/haplotypeLocations.html
  • lines changed 7, context: html, text, full: html, text
    changing haplotypeLocations track to altSequence
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    more chromosomes available for haplotypeLocations track
  • lines changed 22, context: html, text, full: html, text
    adding patch2Chain and patch2Psl tracks
  • lines changed 5, context: html, text, full: html, text
    changing haplotypeLocations track to altSequence
• src/hg/makeDb/trackDb/pig/susScr2/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    indicated lifted from Ensembl Sscrofa9 for ensGene
• src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    indicate lifting ensGene from EF 2
• src/hg/overlapSelect/makefile
  • lines changed 3, context: html, text, full: html, text
    MYSQLLIBS should be on the L += line, not the MYLIBS line
• src/hg/pslCDnaFilter/makefile
  • lines changed 2, context: html, text, full: html, text
    MYSQLLIBS should be on the L += line, not the MYLIBS line
• src/hg/pslDiff/makefile
  • lines changed 2, context: html, text, full: html, text
    MYSQLLIBS should be on the L += line, not the MYLIBS line