Commits for hiram

v238_base to v239_preview (2010-08-17 to 2010-08-24) v239

• watch out for MYSQLIBS to have other stuff there than just library names
  • src/hg/estOrient/makefile - lines changed 2, context: html, text, full: html, text
• MYSQLLIBS should be on the L += line, not the MYLIBS line
  • src/hg/overlapSelect/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/pslDiff/makefile - lines changed 2, context: html, text, full: html, text
• rebuilding all blast tabs on account of new Ensembl v59 genes
  • src/hg/makeDb/doc/blastTab.txt - lines changed 320, context: html, text, full: html, text
• add not about scripts to run everything
  • src/hg/makeDb/doc/blastTab.txt - lines changed 4, context: html, text, full: html, text
• documenting patch2 update procedure
  • src/hg/makeDb/doc/hg19.txt - lines changed 486, context: html, text, full: html, text
• more chromosomes available for haplotypeLocations track
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
• updated with ce6 sacCer2 and dm3 recipBest
  • src/hg/makeDb/doc/blastTab.txt - lines changed 85, context: html, text, full: html, text
• adding danRer6 recip best
  • src/hg/makeDb/doc/blastTab.txt - lines changed 40, context: html, text, full: html, text
• indicate lifting ensGene from EF 2
  • src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.ra - lines changed 3, context: html, text, full: html, text
• indicated lifted from Ensembl Sscrofa9 for ensGene
  • src/hg/makeDb/trackDb/pig/susScr2/trackDb.ra - lines changed 2, context: html, text, full: html, text
• adding patch2Chain and patch2Psl tracks
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 22, context: html, text, full: html, text
• changing haplotypeLocations track to altSequence
  • src/hg/makeDb/trackDb/human/hg19/altSequence.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/haplotypeLocations.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 5, context: html, text, full: html, text