File Changes for braney

v239_base to v240_preview (2010-08-31 to 2010-09-07) v240

• src/hg/hgc/hgc.c
  • lines changed 28, context: html, text, full: html, text
    a couple of changes to Gencode track
  • lines changed 9, context: html, text, full: html, text
    print out level if we have a class table with a level field
  • lines changed 6, context: html, text, full: html, text
    do the spacing correctly when there is more than one transcript for an id. I think this only happens on the PAR regions.
• src/hg/inc/gencodeGeneClass.h
  • lines changed 31, context: html, text, full: html, text
    update to reflect reality, apparently these haven't been used for a while
• src/hg/lib/gencodeGeneClass.as
  • lines changed 6, context: html, text, full: html, text
    update to reflect reality, apparently these haven't been used for a while
• src/hg/lib/gencodeGeneClass.c
  • lines changed 104, context: html, text, full: html, text
    update to reflect reality, apparently these haven't been used for a while
• src/hg/lib/gencodeGeneClass.sql
  • lines changed 6, context: html, text, full: html, text
    update to reflect reality, apparently these haven't been used for a while
• src/hg/makeDb/doc/encodeDccHg19/gencodeV4.txt
  • lines changed 32, context: html, text, full: html, text
    more doc
  • lines changed 9, context: html, text, full: html, text
    reload classes table with hgLoadSqlTab to get around some munging
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencode.html
  • lines changed 2, context: html, text, full: html, text
    some changes that Katrina requested, version 4 instead of release 4, and taking V4 out of the short table
  • lines changed 1, context: html, text, full: html, text
    change 2way_consensus_pseudogene to 2way_pseudogene
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencode.ra
  • lines changed 1, context: html, text, full: html, text
    some changes that Katrina requested, version 4 instead of release 4, and taking V4 out of the short table
  • lines changed 2, context: html, text, full: html, text
    change 2way_consensus_pseudogene to 2way_pseudogene
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    add 2way_pseudogene
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v240 preview