File Changes for hiram

v240_base to v241_preview (2010-09-14 to 2010-09-21) v241

• src/hg/makeDb/doc/bruMal1.txt
  • lines changed 49, context: html, text, full: html, text
    initial Brugia malayi browser build
• src/hg/makeDb/doc/ce9.txt
  • lines changed 75, context: html, text, full: html, text
    added sanger RNA and Pseudo gene tracks
  • lines changed 457, context: html, text, full: html, text
    coming to a close on sangerGene and geneSorter construction
  • lines changed 190, context: html, text, full: html, text
    have sanger gene tables with names fixed
  • lines changed 2, context: html, text, full: html, text
    have sanger gene tables with names fixed
  • lines changed 81, context: html, text, full: html, text
    adding sangerGeneToWBGeneID table
  • lines changed 37, context: html, text, full: html, text
    donw with chainSelf
• src/hg/makeDb/doc/melHap1.txt
  • lines changed 52, context: html, text, full: html, text
    initial sequence for Meloidogyne hapla - Root Knot nematode
• src/hg/makeDb/doc/melInc1.txt
  • lines changed 49, context: html, text, full: html, text
    initial sequence for Meloidogyne incognita WS210
• src/hg/makeDb/schema/all.joiner
  • lines changed 3, context: html, text, full: html, text
    adding ce9
  • lines changed 2, context: html, text, full: html, text
    some exceptions for ce9
  • lines changed 1, context: html, text, full: html, text
    incorrect character on a ce9 definition
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding bruMal1 to the build
  • lines changed 1, context: html, text, full: html, text
    initial sequence for Meloidogyne hapla - Root Knot nematode
  • lines changed 1, context: html, text, full: html, text
    initial sequence for Meloidogyne incognita WS210
• src/hg/makeDb/trackDb/worm/bruMal1/description.html
  • lines changed 129, context: html, text, full: html, text
    initial Brugia malayi browser build
• src/hg/makeDb/trackDb/worm/bruMal1/gap.html
  • lines changed 64, context: html, text, full: html, text
    initial Brugia malayi browser build
• src/hg/makeDb/trackDb/worm/bruMal1/gold.html
  • lines changed 23, context: html, text, full: html, text
    initial Brugia malayi browser build
• src/hg/makeDb/trackDb/worm/bruMal1/trackDb.ra
  • lines changed 40, context: html, text, full: html, text
    initial Brugia malayi browser build
• src/hg/makeDb/trackDb/worm/ce9/trackDb.ra
  • lines changed 21, context: html, text, full: html, text
    adding sangerRnaGene and sangerPseudoGene
  • lines changed 11, context: html, text, full: html, text
    adding chainSelf
• src/hg/makeDb/trackDb/worm/melHap1/description.html
  • lines changed 129, context: html, text, full: html, text
    initial sequence for Meloidogyne hapla - Root Knot nematode
• src/hg/makeDb/trackDb/worm/melHap1/gap.html
  • lines changed 64, context: html, text, full: html, text
    initial sequence for Meloidogyne hapla - Root Knot nematode
• src/hg/makeDb/trackDb/worm/melHap1/gold.html
  • lines changed 23, context: html, text, full: html, text
    initial sequence for Meloidogyne hapla - Root Knot nematode
• src/hg/makeDb/trackDb/worm/melHap1/trackDb.ra
  • lines changed 40, context: html, text, full: html, text
    initial sequence for Meloidogyne hapla - Root Knot nematode
• src/hg/makeDb/trackDb/worm/melInc1/description.html
  • lines changed 129, context: html, text, full: html, text
    initial sequence for Meloidogyne incognita WS210
• src/hg/makeDb/trackDb/worm/melInc1/gap.html
  • lines changed 64, context: html, text, full: html, text
    initial sequence for Meloidogyne incognita WS210
• src/hg/makeDb/trackDb/worm/melInc1/gold.html
  • lines changed 23, context: html, text, full: html, text
    initial sequence for Meloidogyne incognita WS210
• src/hg/makeDb/trackDb/worm/melInc1/trackDb.ra
  • lines changed 40, context: html, text, full: html, text
    initial sequence for Meloidogyne incognita WS210
• src/product/README.install
  • lines changed 2, context: html, text, full: html, text
    trash symlink not needed in cgi-bin
• src/product/scripts/browserEnvironment.txt
  • lines changed 2, context: html, text, full: html, text
    samtools is on version 0.1.8 now
• src/product/scripts/loadDb.sh
  • lines changed 2, context: html, text, full: html, text
    fixups to be more neutral for Mac utilities
  • lines changed 0, context: html, text, full: html, text
    fixups to be more neutral for Mac utilities
• src/product/scripts/updateHtml.sh
  • lines changed 5, context: html, text, full: html, text
    better exclude statements
• src/weblet/counter/makefile
  • lines changed 1, context: html, text, full: html, text
    properly use EXE extension