Commits for hiram

v240_base to v241_preview (2010-09-14 to 2010-09-21) v241

• samtools is on version 0.1.8 now
  • src/product/scripts/browserEnvironment.txt - lines changed 2, context: html, text, full: html, text
• adding sangerRnaGene and sangerPseudoGene
  • src/hg/makeDb/trackDb/worm/ce9/trackDb.ra - lines changed 21, context: html, text, full: html, text
• added sanger RNA and Pseudo gene tracks
  • src/hg/makeDb/doc/ce9.txt - lines changed 75, context: html, text, full: html, text
• properly use EXE extension
  • src/weblet/counter/makefile - lines changed 1, context: html, text, full: html, text
• better exclude statements
  • src/product/scripts/updateHtml.sh - lines changed 5, context: html, text, full: html, text
• coming to a close on sangerGene and geneSorter construction
  • src/hg/makeDb/doc/ce9.txt - lines changed 457, context: html, text, full: html, text
• adding ce9
  • src/hg/makeDb/schema/all.joiner - lines changed 3, context: html, text, full: html, text
• have sanger gene tables with names fixed
  • src/hg/makeDb/doc/ce9.txt - lines changed 190, context: html, text, full: html, text
• have sanger gene tables with names fixed
  • src/hg/makeDb/doc/ce9.txt - lines changed 2, context: html, text, full: html, text
• adding sangerGeneToWBGeneID table
  • src/hg/makeDb/doc/ce9.txt - lines changed 81, context: html, text, full: html, text
• some exceptions for ce9
  • src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text
• adding chainSelf
  • src/hg/makeDb/trackDb/worm/ce9/trackDb.ra - lines changed 11, context: html, text, full: html, text
• donw with chainSelf
  • src/hg/makeDb/doc/ce9.txt - lines changed 37, context: html, text, full: html, text
• fixups to be more neutral for Mac utilities
  • src/product/scripts/loadDb.sh - lines changed 2, context: html, text, full: html, text
• fixups to be more neutral for Mac utilities
  • src/product/scripts/loadDb.sh - lines changed 0, context: html, text, full: html, text
• trash symlink not needed in cgi-bin
  • src/product/README.install - lines changed 2, context: html, text, full: html, text
• incorrect character on a ce9 definition
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• initial Brugia malayi browser build
  • src/hg/makeDb/doc/bruMal1.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/bruMal1/description.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/bruMal1/gap.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/bruMal1/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/bruMal1/trackDb.ra - lines changed 40, context: html, text, full: html, text
• adding bruMal1 to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• initial sequence for Meloidogyne hapla - Root Knot nematode
  • src/hg/makeDb/doc/melHap1.txt - lines changed 52, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melHap1/description.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melHap1/gap.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melHap1/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melHap1/trackDb.ra - lines changed 40, context: html, text, full: html, text
• initial sequence for Meloidogyne incognita WS210
  • src/hg/makeDb/doc/melInc1.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melInc1/description.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melInc1/gap.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melInc1/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melInc1/trackDb.ra - lines changed 40, context: html, text, full: html, text