All File Changes
v241_base to v242_preview (2010-09-28 to 2010-10-05) v242
- src/hg/blastToPsl/blastToPsl.c
- lines changed 5, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/blastXmlToPsl.c
- lines changed 6, context: html, text, full: html, text
special case handling of target ids for psiBlast
- lines changed 130, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/pslBuild.c
- lines changed 31, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/pslBuild.h
- lines changed 10, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/tests/expected/mrna1Test.bscores
- lines changed 13, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/tests/expected/prot1Test.bscores
- lines changed 73, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/tests/expected/prot2Test.bscores
- lines changed 4, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/tests/expected/qtName1Test.psl
- lines changed 4, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/tests/expected/qtName2Test.psl
- lines changed 4, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/blastToPsl/tests/expected/sp1PsiBlastTest.psl
- lines changed 4, context: html, text, full: html, text
special case handling of target ids for psiBlast
- src/hg/blastToPsl/tests/input/sp1.psiBlast.xml
- lines changed 258, context: html, text, full: html, text
special case handling of target ids for psiBlast
- src/hg/blastToPsl/tests/makefile
- lines changed 9, context: html, text, full: html, text
special case handling of target ids for psiBlast
- lines changed 13, context: html, text, full: html, text
added options to specify how to obtained qName and tName. Output query and target defs in score file
- src/hg/das/das.c
- lines changed 68, context: html, text, full: html, text
added headers to allow access to das from javascript browsers, fixed a code crash
- src/hg/das/tests/dasXmlValidate
- lines changed 0, context: html, text, full: html, text
added headers to allow access to das from javascript browsers, fixed a code crash
- lines changed 62, context: html, text, full: html, text
added headers to allow access to das from javascript browsers, fixed a code crash
- src/hg/das/tests/makefile
- lines changed 7, context: html, text, full: html, text
added headers to allow access to das from javascript browsers, fixed a code crash
- src/hg/encode/encodeValidate/config/cv.ra
- lines changed 18, context: html, text, full: html, text
Updated Mouse Strain and Age metadata for CH12 and MEL cell lines
- lines changed 1, context: html, text, full: html, text
Added comment to descirbe the B10.H-2aH-4bp/Wts is associated with the CH12 cell line
- lines changed 7, context: html, text, full: html, text
Updated RnaExtract to be short total from short. Providing more information about meta-data. Also deleted reference to parentTables that have no function
- src/hg/encode/encodeValidate/config/expVars.ra
- lines changed 5, context: html, text, full: html, text
Added experiment vars for Cshl Short RNA-seq data
- src/hg/encode/encodeValidate/doEncodeValidate.pl
- lines changed 23, context: html, text, full: html, text
Cricket forced me to rework this ugle special case code to be more clear though not necessarily less ugly. Now Yale RNA will display bams.
- src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb
- lines changed 2, context: html, text, full: html, text
removing unneeded autoResume option from upload since paraFetch does it automatically now
- lines changed 3, context: html, text, full: html, text
unfreezing loaded state to allow users to click unload, as requested by Cricket on behalf of Spain
- src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml
- lines changed 25, context: html, text, full: html, text
unfreezing loaded state to allow users to click unload, as requested by Cricket on behalf of Spain
- src/hg/encode/hgEncodeSubmit/app/views/pipeline/upload.rhtml
- lines changed 5, context: html, text, full: html, text
removing unneeded autoResume option from upload since paraFetch does it automatically now
- src/hg/encode/hgEncodeSubmit/config/paraFetch.yml.sample
- lines changed 11, context: html, text, full: html, text
adding configurable site-specific limits for running paraFetch
- src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb
- lines changed 5, context: html, text, full: html, text
needed quotes around echo string because of brackets
- lines changed 15, context: html, text, full: html, text
properly handling killing all descendants of the child that has timed out
- lines changed 39, context: html, text, full: html, text
adding configurable site-specific limits for running paraFetch
- lines changed 1, context: html, text, full: html, text
removing unneeded autoResume option from upload since paraFetch does it automatically now
- src/hg/encode/hgEncodeSubmit/pipeline_runner.rb
- lines changed 40, context: html, text, full: html, text
adding configurable site-specific limits for running paraFetch
- lines changed 3, context: html, text, full: html, text
oops there are quotes around the url argument
- lines changed 2, context: html, text, full: html, text
fixing parse logic - ruby strings not like python slices
- src/hg/encode/metaCollect/makefile
- lines changed 18, context: html, text, full: html, text
a utility to collect together datasets based on their metadata
- src/hg/encode/metaCollect/metaCollect.c
- lines changed 281, context: html, text, full: html, text
a utility to collect together datasets based on their metadata
- src/hg/encode/metaRename/makefile
- src/hg/encode/metaRename/metaRename.c
- src/hg/hgTables/great.c
- lines changed 1, context: html, text, full: html, text
Revert "fix compiler warning"
This reverts commit 8670dfac348cdfd889f2124823e14927a1f5ddc2.
Angie had already fixed it.
- src/hg/hgTables/schema.c
- lines changed 52, context: html, text, full: html, text
Edits based on code review, and fix for pgSnp custom tracks
- src/hg/hgTrackUi/hgTrackUi.c
- lines changed 1, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- lines changed 3, context: html, text, full: html, text
Support for triggering superTrack reshaping when superTrackChild is made visible
- src/hg/hgTracks/.old
- lines changed 0, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- src/hg/hgTracks/config.c.priority
- lines changed 516, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- src/hg/hgTracks/hgRenderTracks
- lines changed 0, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 0, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/hgTracks.c
- lines changed 6, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- lines changed 17, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 9, context: html, text, full: html, text
SuperTracks can now be found in simple search too.
- lines changed 2, context: html, text, full: html, text
Not enjoying unhappy news, I am making all containers be supject to reshaping in hgTracks
- src/hg/hgTracks/hgTracks.c.fxit
- lines changed 5631, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 5631, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/hgTracks.c.old
- lines changed 5646, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 5646, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/hgTracks.c.old2
- lines changed 5751, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 5751, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/hgTracks.c.priority
- lines changed 5722, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 5722, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/hgTracks.h
- lines changed 10, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- src/hg/hgTracks/hgTracks.h.priority
- lines changed 1221, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 1221, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/hgTracks.patch
- lines changed 131, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 131, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/imageV2.c
- lines changed 4, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- lines changed 62, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- src/hg/hgTracks/imageV2.c.fxit
- lines changed 1742, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 1742, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/imageV2.c.old
- lines changed 1792, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 1792, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/imageV2.h.fxit
- lines changed 341, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 341, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/mainMain.c.fxit
- lines changed 79, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 79, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/searchTracks.c
- lines changed 35, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- lines changed 18, context: html, text, full: html, text
remove trackMetadata code (hash wasn't being used any more)
- lines changed 118, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 15, context: html, text, full: html, text
SuperTracks can now be found in simple search too.
- lines changed 2, context: html, text, full: html, text
Fix for 'View in Browser' button didn't work because jquery selectors :hidden and :enabled appear to be incompatible
- src/hg/hgTracks/searchTracks.c.fxit
- lines changed 861, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 861, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/searchTracks.c.old
- lines changed 779, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 779, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/simpleTracks.c
- lines changed 1, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- lines changed 89, context: html, text, full: html, text
Edits based on code review, and fix for pgSnp custom tracks
- src/hg/hgTracks/simpleTracks.c.diff
- lines changed 9, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 9, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/tmp.txt
- lines changed 53, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 53, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/tmp2.txt
- lines changed 47, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 47, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/hgTracks/wigMafTrack.c.old
- lines changed 2530, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 2530, context: html, text, full: html, text
Fixing git mess (I hope) created from an accidental 'git add .'
- src/hg/htdocs/FAQ/FAQformat.html
- lines changed 2, context: html, text, full: html, text
updated GFF link at Belinda's suggestion.
- lines changed 6, context: html, text, full: html, text
Oops -- commented out mod from Belinda that's not ready for primetime yet.
- src/hg/htdocs/goldenPath/pubs.html
- src/hg/inc/hui.h
- lines changed 9, context: html, text, full: html, text
Added 'extra' for javascript calls to a couple of html drop downs
- src/hg/inc/jksql.h
- lines changed 4, context: html, text, full: html, text
Port and socket support for db profiles.
- src/hg/inc/trackDb.h
- lines changed 116, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- src/hg/js/hgTracks.js
- lines changed 1, context: html, text, full: html, text
add tooltip to metadata help links
- lines changed 15, context: html, text, full: html, text
FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
- lines changed 33, context: html, text, full: html, text
Katrina wants 'View in Browser' button to reflect user's changes rather than whether tracks are checked or not.
- lines changed 6, context: html, text, full: html, text
Fix for 'View in Browser' button didn't work because jquery selectors :hidden and :enabled appear to be incompatible
- src/hg/js/hui.js
- lines changed 13, context: html, text, full: html, text
Support for triggering superTrack reshaping when superTrackChild is made visible
- src/hg/js/utils.js
- lines changed 24, context: html, text, full: html, text
Support for triggering superTrack reshaping when superTrackChild is made visible
- src/hg/lib/cart.c
- lines changed 156, context: html, text, full: html, text
Extended composite shaping to shape multiTracks as well. There are some differences, though.
- src/hg/lib/hdb.c
- lines changed 3, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- src/hg/lib/hui.c
- lines changed 1, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- lines changed 9, context: html, text, full: html, text
subtracks without explicit (cart) vis but are selected, should get inherited vis
- lines changed 25, context: html, text, full: html, text
Added 'extra' for javascript calls to a couple of html drop downs
- src/hg/lib/jksql.c
- lines changed 37, context: html, text, full: html, text
Port and socket support for db profiles.
- lines changed 1, context: html, text, full: html, text
sqlGetResultExt should return errors on failure.
(Rather than on success).
- src/hg/lib/mdb.c
- lines changed 5, context: html, text, full: html, text
use case-insensitive sort in mdbValSearch
- lines changed 1, context: html, text, full: html, text
Fixed the sort order of right side dropDowns in findTracks
- src/hg/lib/pgSnp.c
- lines changed 3, context: html, text, full: html, text
Edits based on code review, and fix for pgSnp custom tracks
- src/hg/lib/trackDbCustom.c
- lines changed 15, context: html, text, full: html, text
Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
- src/hg/makeDb/doc/bruMal1.txt
- lines changed 21, context: html, text, full: html, text
assign blat servers and set default position to ZC101.2e, genbank all done
- src/hg/makeDb/doc/caeJap3.txt
- lines changed 19, context: html, text, full: html, text
assign blat servers and set default position to ZC101.2e, genbank all done
- src/hg/makeDb/doc/ce9.txt
- lines changed 227, context: html, text, full: html, text
have phylo tree 4D calculation done and started on phastCons
- lines changed 83, context: html, text, full: html, text
now have priPac2 with lastz and rerunning multiz with priPac2
- src/hg/makeDb/doc/haeCon1.txt
- lines changed 21, context: html, text, full: html, text
assign blat servers and set default position to ZC101.2e, genbank all done
- src/hg/makeDb/doc/hg19.txt
- src/hg/makeDb/doc/melHap1.txt
- lines changed 20, context: html, text, full: html, text
assign blat servers and set default position to ZC101.2e, genbank all done
- src/hg/makeDb/doc/melInc1.txt
- lines changed 21, context: html, text, full: html, text
assign blat servers and set default position to ZC101.2e, genbank all done
- src/hg/makeDb/doc/priPac2.txt
- lines changed 203, context: html, text, full: html, text
initial build and thru masking
- lines changed 18, context: html, text, full: html, text
assign blat servers and set default position to ZC101.2e
- src/hg/makeDb/genbank/etc/align.dbs
- lines changed 5, context: html, text, full: html, text
adding bruMal1 caeJap3 haeCon1 melInc1 and melHap1
- src/hg/makeDb/genbank/etc/hgwdev.dbs
- lines changed 5, context: html, text, full: html, text
adding bruMal1 caeJap3 haeCon1 melInc1 and melHap1
- src/hg/makeDb/trackDb/cactus/cacTus2/description.html
- lines changed 129, context: html, text, full: html, text
Initial descriptions for cacTus2.
- src/hg/makeDb/trackDb/cactus/cacTus2/gap.html
- lines changed 37, context: html, text, full: html, text
Initial descriptions for cacTus2.
- src/hg/makeDb/trackDb/cactus/cacTus2/gold.html
- lines changed 29, context: html, text, full: html, text
Initial descriptions for cacTus2.
- src/hg/makeDb/trackDb/cactus/cacTus2/trackDb.ra
- lines changed 8, context: html, text, full: html, text
Initial descriptions for cacTus2.
- lines changed 18, context: html, text, full: html, text
add the bed and maf tracks
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
- lines changed 48, context: html, text, full: html, text
Updated dataType i.e Assay from ShortRnaSeq to RnaSeq to be consistent
- lines changed 58, context: html, text, full: html, text
Updated RnaExtract to be short total from short. Providing more information about meta-data. Also deleted reference to parentTables that have no function
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- lines changed 8185, context: html, text, full: html, text
added lots and lots of tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
- lines changed 682, context: html, text, full: html, text
Added 7 submissions in trackDb and metaDb
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
- lines changed 47, context: html, text, full: html, text
added file index where missing
- lines changed 6, context: html, text, full: html, text
changed the 6 bedgraphs to bigWigs
- lines changed 1, context: html, text, full: html, text
changed the 6 bedgraphs to bigWigs
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/makefile
- lines changed 1, context: html, text, full: html, text
staging ENCODE CSHL Sm RNA-seq metadata on beta
- lines changed 1, context: html, text, full: html, text
removing duplicate of wgEncodeMapability.ra that I accidentally added
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCshlLongRnaSeq.ra
- lines changed 2738, context: html, text, full: html, text
added lots and lots of tracks
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.html
- lines changed 1, context: html, text, full: html, text
removing Alignment color and score info; was correct in hg18, but in hg19 BAM file format is used and coloring/scoring is different
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
fixing typo; should be 1 million rather than 10 million
- lines changed 44, context: html, text, full: html, text
removing release alphas; staging on beta; not necessary because this is a first release
- lines changed 1, context: html, text, full: html, text
turned autoscale on Minus Raw Signal because that is what lab requested
- lines changed 6, context: html, text, full: html, text
added Tier 1 labels, removed limits in bigWigs, fixed order in matrix
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
- lines changed 133, context: html, text, full: html, text
Added 7 submissions in trackDb and metaDb
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
- lines changed 21, context: html, text, full: html, text
Updated track labels and descriptions to comply with changes addressed by Lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra
- lines changed 94, context: html, text, full: html, text
Updated track labels and descriptions to comply with changes addressed by Lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.html
- lines changed 25, context: html, text, full: html, text
Updated track labels and descriptions to comply with changes addressed by Lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra
- lines changed 205, context: html, text, full: html, text
Updated track labels and descriptions to comply with changes addressed by Lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
- lines changed 22, context: html, text, full: html, text
Updated track labels and descriptions to comply with changes addressed by Lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra
- lines changed 121, context: html, text, full: html, text
Updated track labels and descriptions to comply with changes addressed by Lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra
- lines changed 6, context: html, text, full: html, text
changed the 6 bedgraphs to bigWigs
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.html
- lines changed 1, context: html, text, full: html, text
Removed the tag that this was a preliminary track description
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.html
- lines changed 5, context: html, text, full: html, text
Removed the tag that this was a preliminary track description
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.html
- lines changed 1, context: html, text, full: html, text
Removed the tag that this was a preliminary track description
- src/hg/makeDb/trackDb/makefile
- lines changed 1, context: html, text, full: html, text
adding priPac2 to the build
- src/hg/makeDb/trackDb/marmoset/calJac3/cons13way.html
- lines changed 2, context: html, text, full: html, text
change link for tree modal
- src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra
- src/hg/makeDb/trackDb/mouse/mm9/cons30way.html
- lines changed 12, context: html, text, full: html, text
Changed glires -> euarchontoglires, punctuation changes, fixed a link, removed sentenct referring to vertebrate and placental mammals but not euarchontoglires.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile
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Updated make file to include .ra for LICR Histone metadata
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
- lines changed 101, context: html, text, full: html, text
Added metaData for submission 2205
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHistone.ra
- lines changed 49, context: html, text, full: html, text
Updated Mouse Strain and Age metadata for CH12 and MEL cell lines
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 295, context: html, text, full: html, text
Updated Mouse Strain and Age metadata for CH12 and MEL cell lines
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra
- lines changed 31, context: html, text, full: html, text
Updated Mouse Strain and Age metadata for CH12 and MEL cell lines
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra
- lines changed 12, context: html, text, full: html, text
Updated Mouse Strain and Age metadata for CH12 and MEL cell lines
- lines changed 1, context: html, text, full: html, text
Fixed typo in checked strains.
- src/hg/makeDb/trackDb/worm/priPac2/description.html
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initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/worm/priPac2/gap.html
- lines changed 64, context: html, text, full: html, text
initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/worm/priPac2/gold.html
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initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/worm/priPac2/trackDb.ra
- lines changed 40, context: html, text, full: html, text
initial files from makeGenomeDb.pl
- src/hg/utils/automation/makeGenomeDb.pl
- src/hg/utils/makeTrackIndex/makeTrackIndex.c
- lines changed 13, context: html, text, full: html, text
Index should include superTracks
- src/product/README.building.source
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add notes about usr local apache symlinks for convenience
- src/utils/qa/weeklybld/buildEnv.csh
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- files changed: 192