Commits for tdreszer

v241_base to v242_preview (2010-09-28 to 2010-10-05) v242

• Added definition of multiTrack and changed container to be either multiTrack or Composite. This allows multiTracks (such as multiWigs) to behave as composites in some code paths.
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c - lines changed 35, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/trackDb.h - lines changed 116, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 15, context: html, text, full: html, text
• Extended composite shaping to shape multiTracks as well. There are some differences, though.
  • src/hg/lib/cart.c - lines changed 156, context: html, text, full: html, text
• subtracks without explicit (cart) vis but are selected, should get inherited vis
  • src/hg/lib/hui.c - lines changed 9, context: html, text, full: html, text
• Fixed the sort order of right side dropDowns in findTracks
  • src/hg/lib/mdb.c - lines changed 1, context: html, text, full: html, text
• Added 'extra' for javascript calls to a couple of html drop downs
  • src/hg/inc/hui.h - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 25, context: html, text, full: html, text
• Support for triggering superTrack reshaping when superTrackChild is made visible
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 3, context: html, text, full: html, text
  • src/hg/js/hui.js - lines changed 13, context: html, text, full: html, text
  • src/hg/js/utils.js - lines changed 24, context: html, text, full: html, text
• FindTracks now finds superTracks (Advanced only) and hgTrackUi now does superTrack reshaping when children have vis changed
  • src/hg/hgTracks/.old - lines changed 0, context: html, text, full: html, text
  • src/hg/hgTracks/config.c.priority - lines changed 516, context: html, text, full: html, text
  • src/hg/hgTracks/hgRenderTracks - lines changed 0, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 17, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.fxit - lines changed 5631, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.old - lines changed 5646, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.old2 - lines changed 5751, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.priority - lines changed 5722, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 10, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h.priority - lines changed 1221, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.patch - lines changed 131, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c - lines changed 62, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c.fxit - lines changed 1742, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c.old - lines changed 1792, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h.fxit - lines changed 341, context: html, text, full: html, text
  • src/hg/hgTracks/mainMain.c.fxit - lines changed 79, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c - lines changed 118, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c.fxit - lines changed 861, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c.old - lines changed 779, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c.diff - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTracks/tmp.txt - lines changed 53, context: html, text, full: html, text
  • src/hg/hgTracks/tmp2.txt - lines changed 47, context: html, text, full: html, text
  • src/hg/hgTracks/wigMafTrack.c.old - lines changed 2530, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 15, context: html, text, full: html, text
• Fixing git mess (I hope) created from an accidental 'git add .'
  • src/hg/hgTracks/hgRenderTracks - lines changed 0, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.fxit - lines changed 5631, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.old - lines changed 5646, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.old2 - lines changed 5751, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c.priority - lines changed 5722, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h.priority - lines changed 1221, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.patch - lines changed 131, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c.fxit - lines changed 1742, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c.old - lines changed 1792, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h.fxit - lines changed 341, context: html, text, full: html, text
  • src/hg/hgTracks/mainMain.c.fxit - lines changed 79, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c.fxit - lines changed 861, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c.old - lines changed 779, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c.diff - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTracks/tmp.txt - lines changed 53, context: html, text, full: html, text
  • src/hg/hgTracks/tmp2.txt - lines changed 47, context: html, text, full: html, text
  • src/hg/hgTracks/wigMafTrack.c.old - lines changed 2530, context: html, text, full: html, text
• Fixing more git mess
  • src/hg/hgTracks/config.c.priority - lines changed 516, context: html, text, full: html, text
• Index should include superTracks
  • src/hg/utils/makeTrackIndex/makeTrackIndex.c - lines changed 13, context: html, text, full: html, text
• SuperTracks can now be found in simple search too.
  • src/hg/hgTracks/hgTracks.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTracks/searchTracks.c - lines changed 15, context: html, text, full: html, text
• Katrina wants 'View in Browser' button to reflect user's changes rather than whether tracks are checked or not.
  • src/hg/js/hgTracks.js - lines changed 33, context: html, text, full: html, text
• Fix for 'View in Browser' button didn't work because jquery selectors :hidden and :enabled appear to be incompatible
  • src/hg/hgTracks/searchTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 6, context: html, text, full: html, text
• Not enjoying unhappy news, I am making all containers be supject to reshaping in hgTracks
  • src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text
• Stop a linker error
  • src/hg/hgTracks/searchTracks.c - lines changed 2, context: html, text, full: html, text
• Cricket forced me to rework this ugle special case code to be more clear though not necessarily less ugly. Now Yale RNA will display bams.
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 23, context: html, text, full: html, text