Commits for cricket

v242_base to v243_preview (2010-10-12 to 2010-10-19) v243

• added bioRep for Carrie
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 157, context: html, text, full: html, text
• change notes for CshlShort
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlShort.release1.notes - lines changed 187, context: html, text, full: html, text
• change notes for Riken Cage
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release1.notes - lines changed 731, context: html, text, full: html, text
• added new subtracks
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCshlLongRnaSeq.ra - lines changed 88, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra - lines changed 147, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeYaleRnaSeq.ra - lines changed 23, context: html, text, full: html, text
• new release notes
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisRnaPet.release1.notes - lines changed 304, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisRnaSeq.release1.notes - lines changed 88, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisRnaSeq.release1.notes.txt - lines changed 88, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 506, context: html, text, full: html, text
• changed the H1-hESC to be a tier 1 and reflect in the ordering, and the default on status
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra - lines changed 17, context: html, text, full: html, text
• short labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 298, context: html, text, full: html, text
• first draft of wrangling
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra - lines changed 200, context: html, text, full: html, text
• changed short labels, the order of the matrix, alignments set to hide, all of K562 to on, prostate off
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra - lines changed 99, context: html, text, full: html, text
• added fastq information from hg18
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 127, context: html, text, full: html, text
• fixed the color display on bam
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra - lines changed 2, context: html, text, full: html, text
• fixed the pros labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra - lines changed 2, context: html, text, full: html, text
• short and long labels, matrix
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCshlLongRnaSeq.ra - lines changed 858, context: html, text, full: html, text
• renamed the trackDb for CshlLongRna
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncodeCshlLongRnaSeq.ra - lines changed 3041, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 3041, context: html, text, full: html, text
• new track description from CSHL short
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.html - lines changed 62, context: html, text, full: html, text
• added fasta files
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisRnaSeq.release1.notes - lines changed 8, context: html, text, full: html, text
• Additional track description reference for CshlShortRnaSeq
  • src/hg/htdocs/ENCODE/transfragBed6CshlDiscription.html - lines changed 252, context: html, text, full: html, text
• added broken link to supplimentaty track description
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.html - lines changed 1, context: html, text, full: html, text
• more standardization changes and fixing dates for the fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 86, context: html, text, full: html, text
• changed dates on fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 44, context: html, text, full: html, text
• changed matrix order, hide for alignments, PolyA+ for Extract
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra - lines changed 9, context: html, text, full: html, text