File Changes for tdreszer

v243_preview to v243_preview2 (2010-10-19 to 2010-10-26) v243

• src/hg/hgGateway/hgGateway.c
  • lines changed 19, context: html, text, full: html, text
    Fixed loss of assembly when choosing this before track search. Simplified messy multi-form design
  • lines changed 8, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
  • lines changed 12, context: html, text, full: html, text
    Fixed extra lines in FF and different extra lines in IE. Changed bgcolor of copyright notice to no longer differ from rest. Other than that, changed as little as possible.
  • lines changed 1, context: html, text, full: html, text
    Made bg image of blue guidelines a reusable file so browsers can cache it. Made trackSearch dependent upon advanced javascript features.
• src/hg/hgKnownGeneList/hgKnownGeneList.c
  • lines changed 6, context: html, text, full: html, text
    Cleaned up some comments and code as suggested by Jim
• src/hg/hgTracks/config.c
  • lines changed 14, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
  • lines changed 1, context: html, text, full: html, text
    Made bg image of blue guidelines a reusable file so browsers can cache it. Made trackSearch dependent upon advanced javascript features.
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    Fixed number 20 from Katrina's list. Blue bar hotlink form hgTrackUi to 'Genome Browser' had returned to searchTracks if came from there.
  • lines changed 17, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
  • lines changed 32, context: html, text, full: html, text
    Made bg image of blue guidelines a reusable file so browsers can cache it. Made trackSearch dependent upon advanced javascript features.
• src/hg/hgTracks/hgTracks.h
  • lines changed 1, context: html, text, full: html, text
    Needed to make sure all of hgTracks can access jsHelper::advancedJavacriptFeatures()
• src/hg/hgTracks/imageV2.c
  • lines changed 1, context: html, text, full: html, text
    Parent label needed encoding in json. Fixed 1071-26
• src/hg/hgTracks/mainMain.c
  • lines changed 2, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
• src/hg/hgTracks/searchTracks.c
  • lines changed 2, context: html, text, full: html, text
    Fixed number 18 on Katrina's list. Supertrack childen were showing as visibile when their parent was hide
  • lines changed 1, context: html, text, full: html, text
    Fixed number 20 from Katrina's list. Blue bar hotlink form hgTrackUi to 'Genome Browser' had returned to searchTracks if came from there.
  • lines changed 393, context: html, text, full: html, text
    Chopped up doSearchTracks into some logical subroutines. Nothing changed except spacing of 'About' section at bottom of page.
  • lines changed 144, context: html, text, full: html, text
    Search buttons back into tab div and changed some font sizes
  • lines changed 77, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
  • lines changed 5, context: html, text, full: html, text
    Made bg image of blue guidelines a reusable file so browsers can cache it. Made trackSearch dependent upon advanced javascript features.
  • lines changed 18, context: html, text, full: html, text
    More twiddling with css
• src/hg/inc/mdb.h
  • lines changed 4, context: html, text, full: html, text
    Cleaned up some comments and code as suggested by Jim
• src/hg/inc/searchTracks.h
  • lines changed 7, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
  • lines changed 3, context: html, text, full: html, text
    Made bg image of blue guidelines a reusable file so browsers can cache it. Made trackSearch dependent upon advanced javascript features.
• src/hg/inc/trashDir.h
  • lines changed 4, context: html, text, full: html, text
    Added tracksDirReusableFile so that hgTracks bg image of blue lines can be reused.
• src/hg/inc/web.h
  • lines changed 6, context: html, text, full: html, text
    Cleaned up some comments and code as suggested by Jim
• src/hg/js/hgTracks.js
  • lines changed 10, context: html, text, full: html, text
    Restrict track description popup to 900px and set focus on search input in some restricted cases.
  • lines changed 33, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
  • lines changed 3, context: html, text, full: html, text
    More twiddling with css
• src/hg/lib/mdb.c
  • lines changed 11, context: html, text, full: html, text
    Cleaned up some comments and code as suggested by Jim
• src/hg/lib/searchTracks.c
  • lines changed 6, context: html, text, full: html, text
    Made bg image of blue guidelines a reusable file so browsers can cache it. Made trackSearch dependent upon advanced javascript features.
• src/hg/lib/trashDir.c
  • lines changed 21, context: html, text, full: html, text
    Added tracksDirReusableFile so that hgTracks bg image of blue lines can be reused.
• src/hg/lib/web.c
  • lines changed 3, context: html, text, full: html, text
    Fixed number 20 from Katrina's list. Blue bar hotlink form hgTrackUi to 'Genome Browser' had returned to searchTracks if came from there.
  • lines changed 14, context: html, text, full: html, text
    Cleaned up some comments and code as suggested by Jim
  • lines changed 7, context: html, text, full: html, text
    Mostly refiguring to ensure shorter 'get' URL. Paging will remember previous selections but may remove this code.
• src/hg/makeDb/doc/encodeDccHg18/broadBernstein.txt
  • lines changed 747, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg18/dukeUtaUncCrawford.txt
  • lines changed 967, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg18/haibChipSeq.txt
  • lines changed 474, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg18/uwStam.txt
  • lines changed 570, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg18/yaleDavisHarvardSnyder.txt
  • lines changed 214, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt
  • lines changed 1477, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg19/haibTfbsMyers.hg19.txt
  • lines changed 476, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt
  • lines changed 969, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg19/sydnSnyder.hg19.txt
  • lines changed 216, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/doc/encodeDccHg19/uwStam.hg19.txt
  • lines changed 572, context: html, text, full: html, text
    Finally moved make encode make docs from hg18 to hg19 for hg19 submissions. Thus most of this check in is nothing new. However, broadHistone has been updated this week with submissions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 1409, context: html, text, full: html, text
    Broad's fastqs for experiments new to hg19
  • lines changed 2509, context: html, text, full: html, text
    Imported metadata from hg18 for fastq files that have not changed
  • lines changed 17, context: html, text, full: html, text
    Corrections to the last set