Commits for cricket

v244_preview2 to v244_base (2010-11-30 to 2010-12-07) v244

• addressing note #30 from Track #58
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 286, context: html, text, full: html, text
• removed old signal tracks and removed pk from short labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 552, context: html, text, full: html, text
• extending shortLabels to have full cell names
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 7, context: html, text, full: html, text
• changed the subId on the resubmitted fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 8825, context: html, text, full: html, text
• Revert "changed the subId on the resubmitted fastqs"I saved the wrong file This reverts commit 4d2ac33b15736e1f3db68e378bba797cecebabe7.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 8825, context: html, text, full: html, text
• changing subId for fastq resubmissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 47, context: html, text, full: html, text
• changed subId and date for resubmitted MCF-7
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 53, context: html, text, full: html, text
• added new releasenotes for Caltech
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release1.notes - lines changed 895, context: html, text, full: html, text
• removed references to mutliple views in the html file and the views column in the ra file
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 1, context: html, text, full: html, text
• fixed the errant Paired view
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 26, context: html, text, full: html, text
• Changed name of one fastq
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 39, context: html, text, full: html, text
• fixed 025CH+, 025NL+, 025NP+, 026CH+, 026NL+, 026NP+ to not have +
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 37, context: html, text, full: html, text
• removed old error message from the approved status
  • src/hg/encode/encodeStatus/encodeStatus.pl - lines changed 13, context: html, text, full: html, text
• changed to have ripTargetProtein again
  • src/hg/encode/DAFs/2.0/sunySwitchgear.daf - lines changed 15, context: html, text, full: html, text
• added the SunySwitchgear .ra and .html for new track
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html - lines changed 155, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.ra - lines changed 30, context: html, text, full: html, text
• This is trying to accommodate the Methyl450 data
  • src/hg/encode/DAFs/2.0/haibMethylBead.daf - lines changed 43, context: html, text, full: html, text
• This was changed to MethylBead
  • src/hg/encode/DAFs/2.0/haibMethyl27.daf - lines changed 46, context: html, text, full: html, text
• yes to replicates, added ripTgtProtein back
  • src/hg/encode/DAFs/2.0/sunyRnaSeq.daf - lines changed 19, context: html, text, full: html, text
• Georgis track description
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.html - lines changed 81, context: html, text, full: html, text
• commented out the trouble line and added longLabelswq
  • src/hg/encode/DAFs/2.0/haibCnv.daf - lines changed 13, context: html, text, full: html, text
• short labels and long labels were too long, fixed
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 120, context: html, text, full: html, text
• changed the Tier2 status of NHEK and H1-hESC where it is hard coded
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 4, context: html, text, full: html, text