File Changes for vsmalladi

v244_preview2 to v244_base (2010-11-30 to 2010-12-07) v244

• src/hg/encode/DAFs/2.0/stanfordMm9Hist.daf
  • lines changed 1, context: html, text, full: html, text
    Updated input typo in DAF to control
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 135, context: html, text, full: html, text
    Added origAssembly metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra
  • lines changed 577, context: html, text, full: html, text
    Revoked submission 1875 to fix meta-data problems.
  • lines changed 561, context: html, text, full: html, text
    Added fixed 1875 submission
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 5, context: html, text, full: html, text
    Removed errant origAssembly for HepG2 BHLHE40 experiment
  • lines changed 5, context: html, text, full: html, text
    Removed errant origAssembly for GM12878 SIX5 experiment
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 205, context: html, text, full: html, text
    Removed LHSR cell line data from the Open Chrom Faire and Dnase Seq composites.
  • lines changed 75, context: html, text, full: html, text
    Revoked all LHSR submissions
  • lines changed 667, context: html, text, full: html, text
    Re-loaded missing meta-data
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 98, context: html, text, full: html, text
    Removed LHSR cell line data from the Open Chrom Faire and Dnase Seq composites.
  • lines changed 103, context: html, text, full: html, text
    Removed submission 1610 which is also LHSR cell line that was forgotten.
  • lines changed 75, context: html, text, full: html, text
    Revoked all LHSR submissions
  • lines changed 257, context: html, text, full: html, text
    Re-loaded missing meta-data
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra
  • lines changed 1, context: html, text, full: html, text
    Fixed Tier 1 and Tier 2 labels from italic to parenthasis
  • lines changed 1, context: html, text, full: html, text
    Updated track configuration page to display treatment in sortable column
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.html
  • lines changed 16, context: html, text, full: html, text
    Fixed the email dispaly in track description to follow encrypted conventions.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra
  • lines changed 110, context: html, text, full: html, text
    Revoked submission 1875 to fix meta-data problems.
  • lines changed 112, context: html, text, full: html, text
    Added fixed 1875 submission
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra
  • lines changed 845, context: html, text, full: html, text
    Removed LHSR cell line data from the Open Chrom Faire and Dnase Seq composites.
  • lines changed 791, context: html, text, full: html, text
    Fixed removal of LHSR cell line data from the Open Chrome Dnase Seq composites.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra
  • lines changed 29, context: html, text, full: html, text
    Removed LHSR cell line data from the Open Chrom Faire and Dnase Seq composites.
  • lines changed 28, context: html, text, full: html, text
    Removed submission 1610 which is also LHSR cell line that was forgotten.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra
  • lines changed 401, context: html, text, full: html, text
    Added 3 Mouse Submissions
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 143, context: html, text, full: html, text
    Revoked submission 1353
  • lines changed 19, context: html, text, full: html, text
    Update CH12 and MEL meta-data for sex, age and strain.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 25, context: html, text, full: html, text
    Updated meta-data and subgroup information for the p300, CTCF and GATA-1 targets to be mapped to the correct antibodies that are registered in cv.ra.
  • lines changed 31, context: html, text, full: html, text
    Updated meta-data and file and table names to change Input from Std to Igg-rab
  • lines changed 31, context: html, text, full: html, text
    Updated meta-data, file and table names for Mel Rad21 and no treament experiments to updated control=std to control=IgG-rab
  • lines changed 29, context: html, text, full: html, text
    Updated meta-data, file and table names for Mel p300_n-15 to change the control from IgG-mus to IgG-rab
  • lines changed 59, context: html, text, full: html, text
    Update meta-data, file and table names for MEL c-Myb and Max experiments to replace the control Std and IgG-mus, respectivley, to IgG-rab
  • lines changed 15, context: html, text, full: html, text
    Updated meta-data, file and table names to change Input Standard DMSO treated experiments to Input IgG-Yale DMSO treated experiments.
  • lines changed 4, context: html, text, full: html, text
    Updated spelling error in controlId from Input to DMSO_2.0pct
  • lines changed 29, context: html, text, full: html, text
    Updated meta-data, file and tables names for MEL CTCF DMSO treated cell to used IgGYale control instead of Std
  • lines changed 31, context: html, text, full: html, text
    Updated meta-data, file and tables names for MEL Rad21 DMSO treated cell to used IgG-rab control instead of Std
  • lines changed 220, context: html, text, full: html, text
    Update CH12 and MEL meta-data for sex, age and strain.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra
  • lines changed 65, context: html, text, full: html, text
    Added 3 Mouse Submissions
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHist.html
  • lines changed 150, context: html, text, full: html, text
    Fixed the name of Description page to map to track name rather than file name
  • lines changed 1, context: html, text, full: html, text
    Fixed link in description page to reference the correct growth protocols
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.html
  • lines changed 150, context: html, text, full: html, text
    Fixed the name of Description page to map to track name rather than file name
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra
  • lines changed 2, context: html, text, full: html, text
    Updated defaults for P and Q value filters
  • lines changed 1, context: html, text, full: html, text
    Fixed typo in track longLabel to include / after ENCODE and after labto follow ENCODE track style guide
  • lines changed 1, context: html, text, full: html, text
    Added filterby option with matrix for treatment.
  • lines changed 2, context: html, text, full: html, text
    Updated Input reference in longLabels
  • lines changed 4, context: html, text, full: html, text
    Updated Comments in trackDb.
  • lines changed 1, context: html, text, full: html, text
    Updated the default view of Peaks from pack to dense.
  • lines changed 20, context: html, text, full: html, text
    Revoked submission 1353
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.html
  • lines changed 1, context: html, text, full: html, text
    Updated link to Mouse Cell Growth Protocols
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra
  • lines changed 8, context: html, text, full: html, text
    Fixed longLabel typo's and composite structure
  • lines changed 1, context: html, text, full: html, text
    Updated Track long label according to Track Setting Style Guide
  • lines changed 61, context: html, text, full: html, text
    Updated Long labels according to ENCODE Style Guide.
  • lines changed 18, context: html, text, full: html, text
    Updated Short Labels to be unique
  • lines changed 4, context: html, text, full: html, text
    Updated Input reference in longLabels
  • lines changed 1, context: html, text, full: html, text
    Fixed typo in 1 Input in longLabel
  • lines changed 3, context: html, text, full: html, text
    Updated order of columns and alphabetical order of factors
  • lines changed 40, context: html, text, full: html, text
    Set track defaults of subtracks selected
  • lines changed 14, context: html, text, full: html, text
    Updated meta-data and subgroup information for the p300, CTCF and GATA-1 targets to be mapped to the correct antibodies that are registered in cv.ra.
  • lines changed 5, context: html, text, full: html, text
    Updated meta-data and file and table names to change Input from Std to Igg-rab
  • lines changed 4, context: html, text, full: html, text
    Updated meta-data, file and table names for Mel Rad21 and no treament experiments to updated control=std to control=IgG-rab
  • lines changed 4, context: html, text, full: html, text
    Updated meta-data, file and table names for Mel p300_n-15 to change the control from IgG-mus to IgG-rab
  • lines changed 8, context: html, text, full: html, text
    Update meta-data, file and table names for MEL c-Myb and Max experiments to replace the control Std and IgG-mus, respectivley, to IgG-rab
  • lines changed 4, context: html, text, full: html, text
    Updated meta-data, file and table names to change Input Standard DMSO treated experiments to Input IgG-Yale DMSO treated experiments.
  • lines changed 2, context: html, text, full: html, text
    Updated the label for Input IgG-Yale DMSO treatment experiment from facotor=input standard to factor=input IgGyale
  • lines changed 4, context: html, text, full: html, text
    Updated meta-data, file and tables names for MEL CTCF DMSO treated cell to used IgGYale control instead of Std
  • lines changed 4, context: html, text, full: html, text
    Updated meta-data, file and tables names for MEL Rad21 DMSO treated cell to used IgG-rab control instead of Std