Commits for vsmalladi
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v244_preview2 to v244_base (2010-11-30 to 2010-12-07) v244
- Fixed the name of Description page to map to track name rather than file name
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHist.html - lines changed 150, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.html - lines changed 150, context: html, text, full: html, text
- Fixed link in description page to reference the correct growth protocols
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHist.html - lines changed 1, context: html, text, full: html, text
- Updated defaults for P and Q value filters
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 2, context: html, text, full: html, text
- Removed errant origAssembly for HepG2 BHLHE40 experiment
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 5, context: html, text, full: html, text
- Removed errant origAssembly for GM12878 SIX5 experiment
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 5, context: html, text, full: html, text
- Added 3 Mouse Submissions
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 401, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra - lines changed 65, context: html, text, full: html, text
- Fixed typo in track longLabel to include / after ENCODE and after labto follow ENCODE track style guide
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 1, context: html, text, full: html, text
- Fixed longLabel typo's and composite structure
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 8, context: html, text, full: html, text
- Updated Track long label according to Track Setting Style Guide
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
- Updated Long labels according to ENCODE Style Guide.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 61, context: html, text, full: html, text
- Added filterby option with matrix for treatment.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 1, context: html, text, full: html, text
- Updated Short Labels to be unique
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 18, context: html, text, full: html, text
- Updated Input reference in longLabels
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
- Fixed typo in 1 Input in longLabel
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
- Updated order of columns and alphabetical order of factors
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 3, context: html, text, full: html, text
- Set track defaults of subtracks selected
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 40, context: html, text, full: html, text
- Updated Comments in trackDb.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 4, context: html, text, full: html, text
- Updated link to Mouse Cell Growth Protocols
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.html - lines changed 1, context: html, text, full: html, text
- Updated the default view of Peaks from pack to dense.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 1, context: html, text, full: html, text
- Revoked submission 1353
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 143, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra - lines changed 20, context: html, text, full: html, text
- Fixed Tier 1 and Tier 2 labels from italic to parenthasis
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra - lines changed 1, context: html, text, full: html, text
- Added origAssembly metaData
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 135, context: html, text, full: html, text
- Updated meta-data and subgroup information for the p300, CTCF and GATA-1 targets to be mapped to the correct antibodies that are registered in cv.ra.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 14, context: html, text, full: html, text
- Updated meta-data and file and table names to change Input from Std to Igg-rab
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 5, context: html, text, full: html, text
- Updated meta-data, file and table names for Mel Rad21 and no treament experiments to updated control=std to control=IgG-rab
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
- Updated meta-data, file and table names for Mel p300_n-15 to change the control from IgG-mus to IgG-rab
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 29, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
- Update meta-data, file and table names for MEL c-Myb and Max experiments to replace the control Std and IgG-mus, respectivley, to IgG-rab
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 59, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 8, context: html, text, full: html, text
- Updated meta-data, file and table names to change Input Standard DMSO treated experiments to Input IgG-Yale DMSO treated experiments.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 15, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
- Updated the label for Input IgG-Yale DMSO treatment experiment from facotor=input standard to factor=input IgGyale
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 2, context: html, text, full: html, text
- Updated spelling error in controlId from Input to DMSO_2.0pct
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
- Updated input typo in DAF to control
- src/hg/encode/DAFs/2.0/stanfordMm9Hist.daf - lines changed 1, context: html, text, full: html, text
- Removed LHSR cell line data from the Open Chrom Faire and Dnase Seq composites.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 205, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 98, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra - lines changed 845, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 29, context: html, text, full: html, text
- Removed submission 1610 which is also LHSR cell line that was forgotten.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 103, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 28, context: html, text, full: html, text
- Fixed removal of LHSR cell line data from the Open Chrome Dnase Seq composites.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra - lines changed 791, context: html, text, full: html, text
- Revoked submission 1875 to fix meta-data problems.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra - lines changed 577, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra - lines changed 110, context: html, text, full: html, text
- Updated meta-data, file and tables names for MEL CTCF DMSO treated cell to used IgGYale control instead of Std
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 29, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
- Updated meta-data, file and tables names for MEL Rad21 DMSO treated cell to used IgG-rab control instead of Std
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.ra - lines changed 4, context: html, text, full: html, text
- Update CH12 and MEL meta-data for sex, age and strain.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 19, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 220, context: html, text, full: html, text
- Revoked all LHSR submissions
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 75, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 75, context: html, text, full: html, text
- Added fixed 1875 submission
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra - lines changed 561, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra - lines changed 112, context: html, text, full: html, text
- Updated track configuration page to display treatment in sortable column
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra - lines changed 1, context: html, text, full: html, text
- Fixed the email dispaly in track description to follow encrypted conventions.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.html - lines changed 16, context: html, text, full: html, text
- Re-loaded missing meta-data
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 667, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 257, context: html, text, full: html, text
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